Pelagibacterium nitratireducens: V6617_10695
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Entry
V6617_10695 CDS
T11031
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pnf Pelagibacterium nitratireducens
Pathway
pnf03030
DNA replication
pnf03430
Mismatch repair
pnf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pnf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V6617_10695 (dnaE)
03430 Mismatch repair
V6617_10695 (dnaE)
03440 Homologous recombination
V6617_10695 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pnf03032
]
V6617_10695 (dnaE)
03400 DNA repair and recombination proteins [BR:
pnf03400
]
V6617_10695 (dnaE)
Enzymes [BR:
pnf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
V6617_10695 (dnaE)
DNA replication proteins [BR:
pnf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
V6617_10695 (dnaE)
DNA repair and recombination proteins [BR:
pnf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
V6617_10695 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH
DUF655
HHH_3
Motif
Other DBs
NCBI-ProteinID:
WWT31501
LinkDB
All DBs
Position
complement(2156237..2159680)
Genome browser
AA seq
1147 aa
AA seq
DB search
MSGPGFVHLHVHSAFSLLEGALPLGTILDLAKADGQPAIGIADTNNLFGALEFSEKASGK
GIQPIIGCELALDFGADTEKPSDRVNLGKGSVVLIAADAGGFSNLSELVSRAYQEGVDGR
TAIHIDWLVDNALGLLCLTGGPEGAIAPYLAAGLDVQAEARLAVLHRVFGDRLYVEIQRH
DRALENAVEPRLIELAYTLGLPLVATNEPYYPKQDDYDSHDALLAIAAGSVVAQTERRRL
SDQHYFKSREEMIALFSDLPEALENTVEIAQRCSYRPRTHDPILPKFAAADGVGEEEAVA
AEGEELARQAREGLKMRLADYGHAPERTTQEYEERLEFEIKVIRDMKFPGYFLIVADFIK
WAKAHNIPVGPGRGSGAGSLVAYALTITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQE
RREEVIRYVQDKYGYEQVAQIITFGTLQPRAALRDVGRVLQMPYGQVDRICKLVPNNPAN
PVTLAQAINDEPRLQMMRDEDETVAELLRIAGKLEGLFRHASTHAAGIVIGDRPLQKLLP
LYRDPRSDMPVTQYNLKWVEPAGLVKFDFLGLKTLTTIRYAVEMVKETGVDLDIDAIPLE
DAPTYKLYADGDTYGIFQFESPGMRRSLVELKPDRIEDLIAMNALYRPGPMDNIPSFIHR
KHGHEEVEYPHETLAAVLDETYGIIVYQEQVMQIAQLLAGYSLGEADVLRRAMGKKIKAE
MDKQRVRFQEGAIRNGIKKGQADTIFDLLAKFANYGFNKSHAAAYAWVSYQTAYLKTHYP
EQFYAASMTLDMAQTDKLSDFRREAQKKGIEVVPPCINRSEVNFSVRDGRIFYSLCAVKG
VGRNVAEHIVEIRGDRPFGDLADFASRIDPKVINKRTLETLINAGAFDMLNKRREQLVEV
IDTIVNTAQRETSGRADGIVDMFASSQPQAITPPEHVAPWSLTERLAREHAAIGFYLSAH
PLDDYTELFEKLRVQQWSSFERAARNGAVAGRLAGTLISRQDRRTRKGSTMAIMMFSDPS
GSFECIAFSEQISDFGRWLEPGKSIVLEVGADSRPDGVRLRLINCEPIDASVEKLGRRMT
IFAGNERCLGPIKSQLQPGGEGVVSLVLVRDGGEREYEIELPGQFRLTPQLAGGLKAVTG
VVDVRLN
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtccggtcccggtttcgtccatcttcacgtccattcggccttctcgctgcttgaggga
gcattgccgcttggcacgatactggatttggccaaggctgacggacagcccgccatcggt
attgccgacaccaacaatctgttcggcgcgctggagttttccgagaaggcatcgggcaag
ggtatccagccgatcattggttgcgaattggcgctcgattttggcgccgacaccgaaaag
ccatcagaccgcgtcaatctgggcaaagggtccgtggttctgatcgccgccgatgcagga
ggattttccaacctctccgagctcgtttcgagagcatatcaggagggggtcgacgggcgt
accgccatccacattgactggctggtcgataacgcgctgggcctgctctgtcttacaggt
gggcccgaaggagccatcgccccctatctcgccgcagggcttgacgttcaggccgaggcg
cggctggcggttcttcatcgggtgttcggcgatcggctctatgtcgaaatccagcgccat
gaccgcgcgctggaaaatgccgtcgagccgcgcctgatcgaactggcatatacgctcggt
ctgccgctcgttgcgaccaacgagccttattatcccaagcaggatgactacgattcccac
gatgcgctgctggccatcgccgcgggctccgttgtcgcgcagaccgagcgccggcgcctg
tcggaccagcattatttcaagtcgcgcgaggaaatgatcgcgttgttttccgatctgccc
gaagcgctggaaaacacggtcgagattgcacaacgctgcagctatcgcccacgcactcac
gatcccattctgcccaaattcgctgctgcggacggagtgggggaagaggaggcggtcgcc
gccgaaggagaggaactggcgcgccaggcgcgtgagggactcaagatgcgtttggccgat
tatggccacgcccccgagcgaaccacccaggaatatgaggagcggttggaattcgagatc
aaggtgatccgggacatgaagtttcccggctatttccttatcgttgccgactttattaaa
tgggccaaagcccacaatattcccgtcggcccgggccgtgggtcgggtgccggctcactg
gtggcctatgcgctcaccatcacggacctcgatccgctgcgctacaatctgctgttcgag
cgcttcctcaatcccgaacgcgtgtcgatgcccgactttgacatcgacttctgccaggaa
cgccgtgaagaggtcattcgctacgttcaggacaaatacggctacgagcaggtcgcccag
atcatcaccttcggaacgctccagccacgcgccgcgctgcgcgacgtcggccgcgtgctt
cagatgccctacggccaggtcgaccgcatctgcaagctggtccccaacaatccagccaac
cccgtgaccctggcgcaagcgataaacgacgagccgcgcctgcagatgatgcgcgacgag
gatgagactgtcgccgaactgttgcggattgccggaaagctcgagggcctgttccgccac
gcctcgacccacgccgcaggcatcgtgattggtgaccgcccgctgcaaaagctgctcccg
ctctaccgtgatccgcgctcggatatgccggttacccagtacaatctgaaatgggtcgaa
ccggcaggtcttgtgaagttcgacttcctcggcctcaagacactgaccacgatccgctat
gccgttgaaatggtaaaggaaactggcgtcgacctcgatatcgatgccatcccgctcgag
gatgcgcccacttataagctctacgccgatggcgatacctacggcatcttccagtttgaa
agtccgggcatgcggcgttctctggtcgagctcaagcctgaccgcatcgaagatctgatc
gcgatgaatgcgctctaccggcccggtccgatggacaatatcccgagcttcattcatcgc
aagcacgggcacgaggaggtggaatacccccacgaaacactcgccgcggtactcgatgag
acttacggcatcattgtctatcaggaacaggtgatgcagatcgcccagctcttggctggc
tactccctgggcgaggccgacgtgctgcgccgcgcgatgggcaagaagatcaaggccgaa
atggacaagcagcgcgtccgcttccaggaaggcgcaatccgcaacggcatcaagaagggc
caggccgacaccatcttcgacctgctcgccaagttcgccaattacggcttcaacaagagc
catgccgcagcgtacgcctgggtatcctaccagacggcctatctgaagacccattacccg
gaacaattctacgcggcgtccatgacgctcgacatggcccagacagacaagctgtccgat
ttccgccgtgaggctcagaaaaaaggtattgaagtcgtcccgccttgcatcaaccggtcc
gaggtcaatttctcggtgcgcgatggccgcattttttattcgctgtgcgccgttaagggt
gtgggccggaacgttgccgaacatattgtcgagattcgtggtgaccgcccgttcggcgat
ctcgccgatttcgcctcccgcatcgatccgaaggtcatcaataagcggaccttggaaacg
ctcataaatgccggcgctttcgacatgctcaacaagcgccgcgagcaactggtcgaagtc
attgataccatagtgaacaccgcccagcgcgaaaccagcggtcgcgcagatggcatcgtg
gatatgtttgcgtccagccagccccaggccattacgccccccgaacatgtcgcgccctgg
agcctcaccgaacgtctggcgcgcgaacacgctgccataggcttctatctctccgcccat
cctctcgatgactacaccgagctgttcgagaaactccgcgttcagcaatggtcaagcttc
gagcgcgccgcgagaaatggcgccgttgccgggcgtctggccggaacgctgatctcgcgc
caagaccgccgcacccgcaagggttcgacgatggcgatcatgatgttttccgatcccagc
gggtcattcgagtgcatagcattttccgagcagatcagtgatttcggccgttggctcgaa
cctggcaagtcgatagtgctcgaggtcggcgccgattcccggcccgacggcgttcggctc
cgactcatcaattgcgagccgatagatgcctcggtcgaaaagctcggtcgccgcatgacg
atctttgccggcaacgagcgatgccttgggccgatcaaatcccagctccagccgggtggg
gagggggttgtcagcctcgtgctggtccgcgacgggggtgaacgcgagtacgaaattgag
ctgcccggtcagtttcgcctcacgccacaactggccggcgggctcaaagccgttaccggt
gtggttgatgtgcgcttgaactag
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