Pelagibacterium nitratireducens: V6617_11100
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Entry
V6617_11100 CDS
T11031
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pnf Pelagibacterium nitratireducens
Pathway
pnf03410
Base excision repair
pnf03430
Mismatch repair
pnf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pnf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
V6617_11100 (recJ)
03430 Mismatch repair
V6617_11100 (recJ)
03440 Homologous recombination
V6617_11100 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnf03400
]
V6617_11100 (recJ)
DNA repair and recombination proteins [BR:
pnf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
V6617_11100 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
V6617_11100 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V6617_11100 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
WWT31570
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Position
complement(2236391..2238181)
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AA seq
596 aa
AA seq
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MKPEPQAFLNVERSVCGKRWIDRLDLAAGRMAGAIAQQTDLSEILARIIAARGVAVEDAQ
TFIAPTIRALMPDPSTLAGMDALAQRLARAIIDNEPIGLFGDYDVDGASAVALMVRYLRH
FGLNPPTHIPDRIFEGYGPNNAAMESLVEQGVSLIVTLDCGTASHAPIAHAKSLGADVLV
IDHHLAPDTLPDADALVNPNRRDDISGLGYLCATGVAFMVLVATNRVLREAGRAGLPDLM
GWLDLVALATVCDVVPLKGLNRAFVLRGLDVMRAGKNVGLSSLAIAARVSGPANAYHLGF
VLGPRINAGGRIGDAGLGARLLSTDDEYEALALAQRLDELNAERQRIEVAAVEQAMATAE
MEIGDGPGPSVLVTGSSDWHQGIVGLVAARLKERFGRPAFAIALGADGGGTGSGRSIPRV
DLGAAVVDAVRGGIIAKGGGHAMAAGVTLTPGQLGPFRQYLNDTLADDVLAARAEDGLKI
DAALTARGANPEFIHQIERAGPFGSGNPTPIFALPAHQIRFADIVGAGGHVRCTVNSGDG
ANLKAIAFRAAGTPLGEALLKARDGQRLHVAGTLNIDHWQGRETVQLRIIDAAIPG
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgaagccagagccccaagcctttctcaacgttgaaagatcggtctgtggcaagcgctgg
atcgatcggctcgaccttgcagctggccgcatggcgggcgccatcgcccagcagaccgac
ctctcggaaattttggcccgcatcatcgccgcgcgcggtgtcgcggtcgaggacgcccag
acctttattgcaccgaccattcgcgcgttgatgcccgacccgtcgacgctggccggcatg
gacgcattggcccagcgcctggcccgcgccattatcgacaacgaacccatcgggctgttt
ggagactatgacgtggatggcgccagcgccgtggcgcttatggtccgatatctgcgccat
ttcgggctcaatccgcccacccatatccccgaccgcatattcgagggctacgggcccaac
aacgcggccatggaaagccttgtcgaacagggcgtctcactgatcgtgaccctcgattgc
ggtaccgccagccacgcgcccattgcacatgccaaatcgcttggcgccgatgttctggtc
atcgaccaccacctggcgcccgatacgcttcccgatgccgacgcgctggtcaatcccaac
cgtcgtgacgacatttccgggctcggttacctgtgcgccaccggcgtagcgttcatggtg
ctggttgccaccaaccgggtccttcgcgaagcgggcagggcgggcctgcccgacctcatg
ggatggctcgatctggtggccctggccacggtatgcgacgtggttccgctcaagggactc
aaccgcgccttcgtgctgcggggcctcgacgtcatgcgggccgggaaaaatgtcgggctc
tcgagcctggctatcgcggctcgcgtctctggcccggccaatgcgtatcacctgggcttc
gtactcgggccccgcatcaatgccggtgggcgcattggagatgccgggctcggagcccga
cttttgtccaccgatgacgagtacgaagcgctcgccttggcccagcgcctggacgagctc
aatgccgaacgccagcgcattgaggtcgctgccgtcgaacaggccatggccaccgcggaa
atggaaatcggtgacggccccggaccgtcggtgctggtgaccggctcctcggactggcat
cagggcatcgtcgggctggtggcggcacgtttgaaggaacgcttcggacgccccgccttt
gccattgccctgggcgccgatggtggcggcaccggctcgggccgctcgatacccagggtt
gatctgggcgccgccgtcgtcgacgccgtacgcggcggcatcatcgccaaaggtggcggc
cacgccatggcggcaggggtgacgctgacgccgggccaactcggacccttccgccaatac
ctcaacgatacccttgctgacgatgttttggcggcccgcgccgaagacgggctgaaaatc
gacgcggcgctcaccgccaggggcgccaatccagagttcatccaccagatcgagcgggcc
ggcccgttcggctccggcaatcccacccccatctttgcgcttcccgcccatcagatccgc
tttgccgacattgtcggggccggggggcatgtgcgctgcacggtcaattcaggcgacggt
gccaacctcaaggccatcgccttccgcgctgccggaacacctttgggcgaagccctgctc
aaggcccgcgacggccaacgtctgcacgtggccggtacactcaatattgatcactggcag
ggccgcgaaaccgtgcaattgcggattatcgatgcagccataccgggttag
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