KEGG   Pelagibacterium nitratireducens: V6617_11310
Entry
V6617_11310       CDS       T11031                                 
Name
(GenBank) L,D-transpeptidase family protein
  KO
K21470  L,D-transpeptidase YcbB
Organism
pnf  Pelagibacterium nitratireducens
Brite
KEGG Orthology (KO) [BR:pnf00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:pnf01002]
    V6617_11310
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:pnf01011]
    V6617_11310
Peptidases and inhibitors [BR:pnf01002]
 Cysteine peptidases
  Family C82
   V6617_11310
Peptidoglycan biosynthesis and degradation proteins [BR:pnf01011]
 Peptidoglycan biosynthesis and degradation
  Transpeptidase
   V6617_11310
SSDB
Motif
Pfam: YkuD PG_binding_1 Big_1 TAT_signal
Other DBs
NCBI-ProteinID: WWT31607
LinkDB
Position
complement(2275000..2276265)
AA seq 421 aa
MRDLKGKLNRRSVVTGLSALAATAAFPMPALSQSLFGGGRKVVTQEQLELNSSTAMNAIG
GTDPIISVDTEYNLQRVAEYYERLNAIGGWPDMPESIFRLGLGSDRAPVRDLRTYLAHTG
DLPRDTPLSDEFDAQLDGAVRGFQARHGLQINGMVDEYTYWAMKVPASTRLNQIKLNIER
VRGLEGKLEDRYVNVNIPAAAIEATEGGQVARRHTAVVGKIDRQTPILRSRIHQINFNPF
WTVPVSIIRRDIIGLVNDNPNYLDEYSIRILDGSGNEVPQSAIDWSTEEATNYTFRQDPG
AQNSMGHVKINFHNPHAVYLHDTPQQGLFAENARFHSSGCVRVANVAEFVAWILRDSGYD
IIDVNANFASGERIDAAVSNPVPIFMTYFTAWANRNGVVSFRDDVYEYDAQGKVDFPEIS
A
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcgcgacttaaaaggaaaactcaatcggcgttcggtcgtgacgggtctgtccgccctt
gcggcgacggcggcttttccgatgcccgctctgtctcaatcgctcttcggcggcggccgc
aaggtggtgacgcaggaacagctggagctcaattccagcacggccatgaacgccattggc
ggaaccgatccgatcatttcggtcgataccgaatacaatctgcagcgtgttgccgagtat
tacgagcgcctcaacgccatcggcggctggcccgacatgcctgaatcgattttccggctc
ggtctgggatcggatcgcgccccggtgcgcgatctgcggacctatctggcacacaccggc
gacctgccgcgcgacacgcctttgtcggacgagttcgacgcccaactggacggcgcggtt
cgcggctttcaggcacggcacggcctgcagatcaacggcatggtcgacgaatacacctat
tgggccatgaaggttccggcctcgacccgcctcaaccagatcaagctcaacatcgagcgc
gtgcgcggcctggaaggcaagctcgaggaccgttacgtcaacgtcaacattcccgccgcc
gccatcgaggccaccgagggcgggcaggtggcgcgccggcatacggccgtggtcggcaag
atcgaccgccagaccccgatcctgcgcagccgcatccaccagatcaatttcaatcctttc
tggacggtgccggtctcgatcattcgccgcgacatcatcgggctggtcaacgacaacccc
aattacctcgacgagtactcgatccgcatcctcgatggcagcggcaacgaggtgccccag
agcgccatcgactggtcgaccgaagaggccacgaactatacgttccggcaggatccgggc
gcccagaactcgatgggccacgtcaagatcaacttccacaacccgcacgccgtctatctt
cacgatacgccccagcagggcttgttcgcggaaaatgcacgtttccattcctcgggctgc
gtccgcgtcgccaatgtggccgagttcgttgcctggatcctgcgcgattccgggtacgac
atcattgatgtgaacgccaacttcgcctccggtgagcggatcgatgccgccgtgtccaat
cccgtgccgatcttcatgacctattttaccgcttgggcgaaccggaacggcgtcgtaagc
ttccgcgacgacgtttacgagtacgacgctcagggcaaggtcgatttccccgaaatcagt
gcctga

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