Pelagibacterium nitratireducens: V6617_15455
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Entry
V6617_15455 CDS
T11031
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pnf Pelagibacterium nitratireducens
Pathway
pnf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6617_15455 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnf03019
]
V6617_15455 (recQ)
03400 DNA repair and recombination proteins [BR:
pnf03400
]
V6617_15455 (recQ)
Enzymes [BR:
pnf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V6617_15455 (recQ)
Messenger RNA biogenesis [BR:
pnf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6617_15455 (recQ)
DNA repair and recombination proteins [BR:
pnf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
V6617_15455 (recQ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HHH
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
WWT32385
UniProt:
A0ABZ2HYB5
LinkDB
All DBs
Position
3140092..3141927
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AA seq
611 aa
AA seq
DB search
MSLFSNATALDAAPAGGLDILRSVFGLDAFRGQQQDVVDHVMGGGDAVVLFPTGAGKSLC
YQIPAIGRPGVGVVISPLIALMRDQVEALKQAGVRAAALNSSLSPEENRSVRQALRDGEL
DLLYVAPERLAAAGFLDLLASVDIGLFAIDEAHCVSQWGHDFRPEYRELAKLRELFPHVP
RVALTATADPTTRADLIERLGLEDAQLFISSFDRPNIGYSIVERANARAQLLDFLARHKG
ESGIVYCLSRAKVEAIAEFLTEKGIPALPYHAGLDAGVRARNQDAFLKEDAVCLVATVAF
GMGIDKPDVRYVAHMDLPSSIEAYYQETGRAGRDGQPSEAWMCYGLSDVSQRRRMIAEGN
APDEIKRLENTKLSALLGVCETAGCRRQAVLAHFGEQHQGNCGNCDTCITPVDTWDGTEA
ANKVMSSIYRTGQRFGAAHVIDVVMGKATEKVEKFRHQHLPVFGVGQDISVKTWRSVVRQ
LTAMGLVHVNHEAHGALYLDEGARAVFRGERTVTLRRDPERKKSDTNRALAGGEALSGEA
EAVFERLRRKRREIASAQGVPPYVVFQDTTLRAMAQRLPATLDDLRALPGVGDAKLERYG
TAFLTAIASAD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcttttttccaacgctacggcccttgatgctgcgccggccggcggactggatatc
ttgcgatccgtgttcgggctcgatgcgtttcgcggccagcagcaagacgtagtcgatcac
gtcatgggtggcggtgacgctgtggtgctttttcccaccggggcggggaaatcgctgtgc
taccagattccggcgatcggccggcccggggtcggcgttgtcatctctcctctgatcgcc
ctgatgcgcgaccaggtcgaagcgctcaagcaggccggcgtgcgggccgcagcgctcaat
tcctcgctttcgcccgaggagaaccgcagcgtgcgccaggccctgcgcgatggggaactc
gatcttctctatgtggcaccggagcgcttggcggcggcggggtttctcgaccttctggcc
agcgtcgacatcgggctttttgccatcgacgaagcccattgcgtgagccagtggggccat
gatttccggcccgaatatcgcgaactggccaaattgcgcgaattgtttccgcacgtcccg
cgcgttgcgctgacggcgacggccgaccccacaacccgcgccgatctgattgagcggctg
gggctggaggatgcgcagcttttcatctcgagtttcgatcggcccaatatcggctattcg
attgtcgagcgcgccaatgcgcgagcgcaattgctcgattttctggcccgccacaagggc
gaaagcggcatcgtttattgcctctcgcgcgccaaggtggaggcgattgccgagttcctg
accgaaaagggtatccctgccctgccctatcacgccggtctagatgcgggcgtaagggcg
cgcaaccaggacgcgtttttgaaggaagacgccgtgtgtctggtggcaaccgttgcgttc
gggatggggatcgacaagccagatgttcgctatgtggcgcatatggatttgccctcctcg
atagaggcttactatcaggaaacgggccgggccggtcgcgacgggcagccctcggaagcc
tggatgtgttatgggctgtccgatgtgagccagaggcggcggatgatcgccgaaggcaac
gcgcccgacgagatcaagcggctggaaaacaccaagctgagcgccctgctcggtgtgtgc
gagacggcgggctgccgtcgacaagcggttcttgctcatttcggcgagcagcatcagggc
aattgcgggaattgcgacacctgcatcaccccggtcgacacctgggacggcacggaggcg
gcgaacaaggttatgtcgtcgatctatcgcacgggccagaggttcggcgcggcgcatgtg
atcgatgtcgtgatgggcaaggccaccgaaaaggtggaaaaattcaggcaccagcatttg
ccggttttcggggtcgggcaggatatttcggtcaagacctggcggtcggttgtgcggcag
ttgacggccatggggctggtccatgtgaaccacgaagcccatggcgccctctatctcgat
gaaggcgcgcgggcggtgtttcggggcgaacggacggtgacgctgcggcgcgatcccgag
cgcaagaaatcggacaccaatcgggccctggcgggcggagaagcgctttctggcgaagcc
gaggccgtattcgagcggttgcggcgcaagcggcgtgaaatcgcttcggcgcagggcgtg
ccgccctatgtggtttttcaggatacgacattgcgggccatggcgcagaggctgccggcg
acgctcgatgatctgcgcgccctgccgggggtgggcgatgccaagctcgagcggtacggc
acggcattcctcacggcgattgccagcgcagactag
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