Pelagibacterium nitratireducens: V6617_18015
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Entry
V6617_18015 CDS
T11031
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pnf Pelagibacterium nitratireducens
Pathway
pnf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6617_18015 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnf03019
]
V6617_18015 (pnp)
03016 Transfer RNA biogenesis [BR:
pnf03016
]
V6617_18015 (pnp)
Enzymes [BR:
pnf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
V6617_18015 (pnp)
Messenger RNA biogenesis [BR:
pnf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
V6617_18015 (pnp)
Transfer RNA biogenesis [BR:
pnf03016
]
Prokaryotic type
tRNA degradation factors
V6617_18015 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
aRib
Motif
Other DBs
NCBI-ProteinID:
WWT32876
UniProt:
A0ABZ2I2T5
LinkDB
All DBs
Position
complement(3669754..3671892)
Genome browser
AA seq
712 aa
AA seq
DB search
MTLNFDHHKVELDWGGQPLTLETGKIARQADGAVLATLGETVVLATVVSAKTPKAGIDFF
PLTVNYQEKYFAAGKIPGGYFKREGRPTEAETLTSRLIDRPIRPLFPAGYKNETQVIITV
LQHDMENQPDVLAMVAASAALTISGVPFMGPIGAARVGYVDGEYVLNLPIDRRDDSKLDL
VMAGTADAVLMVESEAKELSEDVMLGAVMFGHQQSQKVIDAIIKLAELAAKEPREFEPAD
MSALETEMLALIESDLRDAYKNTDKMVRYDAVDAVKAKVKAHFIPEEGEAAYTPEQVGAV
FKSLQAKVVRWNILDTKTRIDGRDLETVRPIVSEVGVLPRTHGSAIFTRGETQALVVATL
GTADDEQFIDSLEGTYKQNFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAINPVRP
SAEEFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPMKKAVAGIAMGLILEGEKFA
VLSDILGDEDHLGDMDFKVAGTHDGVTSLQMDIKIAGITEEIMKIALGQAKDGRKHILEE
MAKAIDTARSEVGEFAPRIETLKIPTDKIREVIGTGGKVIREIVEKTGAKINIEDDGTVK
VSSSDGKQIDAAIKWIKSITDEPEVGEVYQGTVVKTADFGAFVNFFGAKDGLVHISQLAE
ERVGKTTDVVKEGDKVWVKLLGFDERGKVRLSMKVIDQETGKEKAKEDEAAE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgacactcaatttcgaccaccacaaagtcgagctcgactggggcggacaacccctcacg
ctcgaaaccggcaagatcgcgcgtcaggccgatggcgccgtgctcgccaccctgggcgaa
accgtggttctggccaccgtcgtttccgccaagacgccaaaggccggcatcgatttcttc
ccgctgaccgtcaactaccaggaaaagtattttgccgccggcaagatcccgggtggctat
ttcaagcgtgaaggccgccccaccgaggccgagacgctgacctcgcgcctgatcgatcgc
ccgatccgccccctgttccccgccgggtacaagaacgagacccaggtcatcatcaccgtg
cttcagcacgacatggaaaatcagcccgacgtgctcgccatggtcgcggcttcagcggcg
ctcaccatttcgggcgtgcccttcatgggccccatcggcgcggcccgcgtcggttatgtc
gatggcgagtatgttttgaacctgcccatcgaccgtcgcgatgattccaagctcgacctc
gtgatggctggcactgccgacgccgtcctgatggtggaatcggaagccaaggagctctcc
gaggacgtcatgctcggcgccgtcatgtttggccaccagcagagccagaaggtgatcgat
gcgatcatcaagctcgccgaactggccgccaaggagccccgcgaattcgaacccgccgat
atgagcgcgctcgaaaccgaaatgctcgcgctgatcgaaagcgatctgcgtgacgcctac
aagaacaccgacaagatggtgcgctacgacgccgtcgacgcggtcaaggccaaggtcaag
gctcacttcatccccgaagagggcgaagcggcctacacccccgaacaggtcggcgcggtg
ttcaagtcgctccaggccaaggtcgtgcgctggaacattctcgacaccaagacccggatt
gacggtcgcgacctcgaaacggtccgcccgatcgtgtccgaagtcggcgtcctgccccgc
actcacggttcggccatcttcactcgcggtgaaacccaggcgctggtcgttgcgacgctg
ggtacggcggacgatgagcagttcatcgattcgctcgaaggtacctacaagcagaacttc
ctgctccactacaacttcccgccctattcggtcggtgaagctggccgcatgggttcgccc
ggacgccgcgaaatcggccacggcaagcttgcctggcgcgccatcaacccggtccgcccc
tcggccgaggaattcccctacaccctgcgtgtggtttccgaaatcaccgaatccaacggt
tcgtcttccatggcaaccgtgtgcggcacctcgctggcgctgatggatgcgggcgttccc
atgaagaaagccgtcgccggcatcgccatgggcctgatcctggaaggcgaaaaattcgcc
gtgctgtccgatatcctgggtgacgaagatcacctcggcgacatggacttcaaggttgcg
ggcacccatgacggcgtgaccagcctgcagatggacatcaagattgccggcatcaccgaa
gagatcatgaagatcgctctgggccaggccaaggatgggcgcaagcacatcctcgaggaa
atggccaaggccatcgacacggcccgttcggaagtgggcgagttcgccccgcgcatcgaa
acgctcaaaatcccgaccgacaagatccgtgaagtgatcggcaccggcggcaaggtgatc
cgtgagatcgtcgaaaagaccggcgccaagatcaacatcgaagacgatggcaccgtcaag
gtctcgtcctcggacggcaagcagatcgatgcggccatcaagtggatcaagtcgatcacc
gacgaacccgaagtgggcgaagtctatcagggcaccgtggtcaagaccgccgatttcggc
gcgttcgtgaacttctttggtgcaaaggacggcctcgtgcacatctcccagctcgccgaa
gagcgcgtgggcaagaccaccgacgtcgtcaaggaaggcgacaaggtctgggtcaagctt
ttaggcttcgacgagcgcggcaaggttcgcctttccatgaaggtcattgatcaggagacc
ggcaaggaaaaggccaaggaagacgaagccgccgaataa
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