Pseudoalteromonas nigrifaciens: PNIG_a0136
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Entry
PNIG_a0136 CDS
T05271
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
png
Pseudoalteromonas nigrifaciens
Pathway
png03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
png00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PNIG_a0136 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
png03019
]
PNIG_a0136 (rhlB)
Enzymes [BR:
png01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PNIG_a0136 (rhlB)
Messenger RNA biogenesis [BR:
png03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PNIG_a0136 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASM52479
UniProt:
A0AAC9UFH2
LinkDB
All DBs
Position
I:121717..122979
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AA seq
420 aa
AA seq
DB search
MTDKKFSDFAIAPEVVAGLTESGFEYCTPIQAKCLPFICEGRDIAGQAQTGTGKTLAFLT
ATCHRLLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQR
AQLEKGVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFHRMPD
TSKRLNLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIQEELFHPSQEDKIKLLL
TLIEEEWPEKAIIFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAEFSKGDLD
FLVATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTARAGASGHAISFACEQYAYNL
HEIEEYIDHSIPLSHYDKTALLDDLTKPTIHRKRNFSTGPRNRSNNSGRRPNNSYQKGRS
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgataaaaagttttcagactttgctattgcaccggaagtggttgccggtttaacc
gaaagtgggtttgaatattgcacacccattcaagctaaatgcctaccttttatttgtgag
ggtcgcgatatcgcaggccaagcacaaacaggtacaggcaaaacgttggcgtttttaact
gccacgtgccatcggttattacaatctagcaaagcccctagtaaacatccaagagccctg
atcatggcccctacaagggagctggcgattcagatacacaaagatgcaaaaattttagcg
ccgcactgtaatcttaacttaggtttagtatatggtggcgaagattacgaaaaacaacgt
gcacaactagaaaaaggcgttgatattttaattggtactacaggtcgtttaattgatctg
tataagcaaggctgttacacccttaatgaaattgaggtagtcgtgcttgacgaagcagat
cgtatgtttgatttgggctttatcaaagatattcgttatatgttccaccgtatgccagat
acatcaaagcgtttaaatttattattctctgcaacgctatcgtatcgtgtacaagaactt
gcgtttgaacatatgaccaatcctgagcacgtacaaattgaaccagacgtaaaaaccggt
aaacgcattcaagaagagctatttcatccttcacaagaagataaaattaagctgctgctg
acgttaattgaagaagagtggcctgaaaaagccattatctttgctaacactaagcatagt
tgtgaaaccgtatatgcctggttaaaagccgatggacatcgggttggcatgcttaccggt
gacgtaaatcagaaaaaacgtcaatcaattttagctgagtttagtaaaggcgacttagac
tttttagtggcaacagatgttgcagcacgtggtctacatattcctgaagtaagccatgta
tttaattttgatttaccagatgattgcgaagattacgtacaccgtattggccgtacagcc
cgcgctggcgcgtctggtcacgctattagttttgcatgtgaacaatatgcttataacttg
catgaaattgaagagtatatagatcacagtattcctttatcacattacgataaaacagca
ttactggatgatttaactaaacctactattcatagaaagcgtaacttttctacaggccca
cgtaatcgcagtaacaacagcggacgtcgcccaaataatagttatcaaaaaggacggtca
taa
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