Pseudoalteromonas nigrifaciens: PNIG_a0258
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Entry
PNIG_a0258 CDS
T05271
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
png
Pseudoalteromonas nigrifaciens
Pathway
png03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
png00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PNIG_a0258 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
png03021
]
PNIG_a0258 (rpoB)
03400 DNA repair and recombination proteins [BR:
png03400
]
PNIG_a0258 (rpoB)
Enzymes [BR:
png01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PNIG_a0258 (rpoB)
Transcription machinery [BR:
png03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PNIG_a0258 (rpoB)
DNA repair and recombination proteins [BR:
png03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PNIG_a0258 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ASM52593
UniProt:
A0AAC9XWG5
LinkDB
All DBs
Position
I:245614..249639
Genome browser
AA seq
1341 aa
AA seq
DB search
MAYSYSEKKRIRKDFGKRPQVLDIPFLLSTQLESFKKFLVPDADGDHGLEAAFRSVFPIK
SYSGNSELQYVSYRIGEPVFDVKECQIRGVTYSAPLRVKLRLVVMDKEAPGTVKDIKEQE
VYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKTHSSGKVLYNARVIPYRG
SWLDFEFDAKDNLYVRIDRRRKLPASIILRALEYSSEDILGIFFDNTTFEVTDGKVLMEL
VPSRLRGETAAFDIKSEDGEVFVESGRRVTARHIKNIEKKGIKQLEVPHEYIIGRVLAKN
YVDESTGEVVANANDELTLELMAELVKAGHTKIDTLYINEVDSGAYMSNTLNIDSSSSRL
EALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSTVGRMKFNSRVGYDTDTGPGTL
SKEDIVSVMKVLIAIRNGVGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSTYARTNDYGFLETPYRKVVDGVVT
DEVDYLSAIEEGQFVIAQANSNLTETNEFVDELIPCRHKGESTFMGRMDQQYMDVSPQQV
ISVAAALIPFLEHDDANRALMGSNMQRQAVPTLKADKPLVGTGIELTLAKDSGVTIVAKR
GGEVMYCDASRIVVNVHEEERVPGEAGIDIYNLTKYTRSNQNTCINQKPTCMVGEPVTRG
DVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSERVVEEDRLTTIHIQELQCIA
RDTKLGSEEITADIPNVGESALGKLDESGVVYIGAEVKSGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVTGTVIDVQVFTRDGVEKDKRALEVEEMQLRDAKKDF
NEEFRILEAGVLDRARKLLIAAGFDEDKLALLNAEKLLTQSLAEEDKQAELEQLAAQYDE
LKAEYDKKFENKRRKITQGDDLAPGVLKIVKVYLAVKRCIQPGDKMAGRHGNKGVISTIV
PVEDMPYDDKGRTVDIVLNPLGVPSRMNIGQILETHMGLAARGIGERIEEMMKEQRELHE
LRAFIKQAYEIGESRQVVDIDSFTDDEIRRLAENLKGGLPIATPAFDGAKENEIKDMLEL
AGYPRSGQVTLYDGRTGDQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHKMEPGMPE
SFNVLLKEIRSLGINIELEEN
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcttattctgaaaagaaacgtatccgtaaggattttggtaaacgtccacaa
gttttggatatacctttcttactatctacacagttagaatcgtttaaaaaattcttagtg
cctgacgctgatggcgatcatggtttggaagcagccttccgttctgtgttcccaattaaa
agctactcaggaaattctgagctgcaatacgtaagttatcgtattggcgagccagttttc
gatgtaaaagaatgtcaaattcgcggtgtgacttattctgctccacttcgcgtgaaattg
cgtcttgtagttatggacaaagaagctccaggcacagttaaagacattaaagagcaagaa
gtttacatgggcgaaattccgctcatgaccgataccggtacctttgtaatcaatggtaca
gagcgtgttatcgtttctcagctacaccgtagccctggtgtattctttgataacgaccgc
ggtaaaactcactcatcgggtaaagtgttatataacgcacgtgttatcccatatcgtggt
tcatggttagactttgaatttgatgcaaaagataacttatatgtacgtattgaccgtcgt
cgtaaattaccggcgtctattatcttacgtgcacttgagtactcgagtgaagacattctt
ggtattttcttcgacaacactacgtttgaagtaactgacggtaaagttcttatggaactg
gtaccttcacgtttacgtggtgaaaccgccgcttttgatattaagagcgaagacggtgaa
gtgtttgttgaaagtggtcgtcgtgttacggctcgccatatcaagaacatcgagaaaaaa
ggcattaagcaattagaagtaccacatgagtacatcattggtcgtgtattagcgaaaaac
tatgttgatgagtcaacaggtgaagttgtagctaatgcaaatgacgagctaacgcttgaa
ttaatggctgaattggttaaagccggtcacactaaaattgatacgttatatatcaatgaa
gtggacagcggtgcttacatgtcaaataccttgaacattgactcttcaagcagccgttta
gaagcattagtagaaatttatcgcatgatgcgcccaggcgagccaccgacgaaagacgcg
gctgaagccttattccagaacttgttcttctcagaagagcgctatgacttatcaacggta
ggtcgtatgaagttcaatagccgtgttggttacgataccgatacaggcccaggcacatta
agcaaagaagacatcgtgtcggttatgaaggtattgattgctattcgtaacggtgttggc
gatgtagatgatattgaccacttaggcaaccgtcgtatccgtagtgttggcgaaatggct
gagaaccaattccgtgtaggtttagtacgtgtagaacgtgctgtacgtgagcgtttaagc
ttaggtgacctagatgcgataatgccacaagatcttattaacgctaagcctatttcggca
gcggttaaagagttcttcggctcgtctcagttatcacagtttatggaccaaaataacccg
ctatcagaagtaacgcataagcgtcgtatttctgcattagggccgggcggtctaactcgt
gagcgcgcaggctttgaagtgcgtgacgttcacgtaactcactatggtcgcgtatgtcca
atcgagactcctgagggtccaaacatcggtctaattaactcattatctacgtacgcacgt
actaatgattatggtttcttagaaacaccttaccgcaaagtggtagacggtgttgtaact
gatgaagttgattacttatcagccattgaagaaggtcagtttgttatcgcacaggcgaac
tcaaacttaaccgaaaccaatgagtttgtagatgaacttattccatgtcgtcacaaaggt
gaatctacctttatgggacgtatggaccagcaatatatggatgtatcaccacaacaggtg
atctctgtagcggcagcacttatcccgttcctagaacacgatgatgctaaccgtgcattg
atgggttcaaacatgcaacgtcaagcagtaccaacattgaaagcggataagccgttagta
ggtactggtattgagttaacactagcgaaagactctggtgttactatcgttgcaaaacgt
ggtggtgaagtaatgtattgtgacgcaagtcgcatcgttgttaatgtacatgaagaagaa
cgcgttccaggcgaagcgggcatcgacatttacaacttaaccaaatacacacgttctaac
caaaatacatgtattaaccaaaaaccaacttgtatggttggcgaaccggttactcgtggc
gatgtgttagcagatggtccttcgactgacttgggcgacttagctcttggtcaaaacttg
cgcgtggcatttatgccatggaatggttataacttcgaggattcaatcttactatcagag
cgcgtagttgaagaagatcgtctaacgactatccacattcaagaactacagtgtattgcc
cgtgatactaaattaggttctgaagagatcactgcagatatcccgaatgtgggcgaatct
gcactaggcaagcttgatgaatcaggcgttgtttatattggtgctgaagttaaaagcggc
gatattctagtaggtaaagtgactccgaaaggcgaaacgcaattaactcctgaagagaag
ctactacgagctatcttcggcgaaaaagcgtctgatgttaaagacagctctttacgtgta
ccaaattctgtaactggtactgtaattgatgtgcaagttttcacccgtgatggtgttgaa
aaagataagcgtgcgttagaagttgaagaaatgcagcttcgcgatgcgaagaaagacttc
aacgaagagttccgtattctagaagctggtgtattagaccgtgcgcgtaagttacttatc
gcagctggctttgatgaagacaaattagcgttattaaatgctgagaagctacttacgcaa
agccttgctgaagaagacaagcaagctgagcttgagcaattagcagcccagtatgacgag
cttaaagctgaatacgataagaagtttgaaaacaaacgtcgtaaaatcactcaaggcgat
gacctagcacctggcgtacttaagattgttaaagtatacctagctgttaaacgttgtatc
caaccgggtgataaaatggcgggtcgtcatggtaacaaaggtgttatctcgactatcgta
ccagtagaagatatgccatacgatgataaaggtcgtacggtagatatcgtacttaaccca
ctgggtgtaccatcacgtatgaacatcggtcagatccttgaaacacatatgggtctagct
gcacgtggtattggtgaacgcattgaagaaatgatgaaagagcaacgtgagctgcatgag
ttacgcgccttcatcaagcaagcctacgaaattggcgaatctcgtcaagtagtagacatt
gatagctttacagatgacgaaattcgtcgtttggctgaaaacttaaaaggtggtttacca
atagctactccagcatttgatggcgcgaaagaaaacgaaatcaaagacatgctagagctt
gcgggctacccaagaagtggtcaggttacactttatgatggccgtactggcgatcagttc
gaacgtcaagtaaccgtaggttacatgtacatgctgaaactgaatcacttagttgatgac
aaaatgcatgcgcgttctactggttcttatagccttgttactcagcagccgctgggtggt
aaagcacagttcggtggccagcgttttggtgagatggaagtatgggcacttgaagcttac
ggtgctgcttacactctacaagaaatgctaacagtgaaatcggatgacgtgaacggtcgt
actaagatgtataaaaacatcgttgatggtaaccataaaatggaaccaggtatgccagaa
tcgtttaacgtattgttaaaagaaatccgctcactgggtatcaacatcgagttggaagaa
aattaa
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