Pseudoalteromonas nigrifaciens: PNIG_a0259
Help
Entry
PNIG_a0259 CDS
T05271
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
png
Pseudoalteromonas nigrifaciens
Pathway
png03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
png00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PNIG_a0259 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
png03021
]
PNIG_a0259 (rpoC)
03400 DNA repair and recombination proteins [BR:
png03400
]
PNIG_a0259 (rpoC)
Enzymes [BR:
png01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PNIG_a0259 (rpoC)
Transcription machinery [BR:
png03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PNIG_a0259 (rpoC)
DNA repair and recombination proteins [BR:
png03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PNIG_a0259 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ASM52594
UniProt:
A0AAC9XWE1
LinkDB
All DBs
Position
I:249744..253916
Genome browser
AA seq
1390 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDAIRIGLASPDMVRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVTEPGMTTLERGQLLGEEEYLDALEEHGDEFEAKM
GAEAVLDLLRELDLAQLIAEMREELPTINSETKRKKITKRLKLMESFHQSGNNPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKKMALELFKPFIYGKLERRGMATTIKAAKKMVEREMPEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRINAKGEGAIFKDPKEAEKAYRSG
NADLHAIVKVRISQSVKNENGVVEDTITVIDTTVGRAILSLILPKGMPYESINQPLGKKQ
ISGLINECYRRLGLKDTVMFADQIMYTGFHYAMKSGVSIGIDDLVIPPVKAQIIEAAEAE
VTEINQQFQSGLVTAGEKYNKVIDIWSRVNENLSREMMSNLSKDTVINAQGEEVEQASFN
SVFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVINEDDCGTEDGLTMKPLIEGGDVVEALRERVL
GRVVAEDIVIPGTNTVLVERNIMLDEKLCDLLEEHSVDEVRVRSVITCDNDFGVCANCYG
RDLARGHIINAGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKTNGTLKL
HNAKYVLNTDGKIAIISRSTEITIIDSYGREKERYKVPYGAVLTVQDNAEVQGNDIVATW
DPHSHPIVLEHKSKVSFSDIDDSNTETQTDELTGLTRIVVKDLSKANAKEPKLIIESEER
GLQETRLPSFTTIEVIDGTTVNPGDVLARIPQEGSKTRDITGGLPRVADLFEARKPKEPA
ILAEVTGTISFGKETKGKKRLVITPDEGDHYEEMIPKWRQLNVFEGERVSKGEVIADGPE
SPHDILRLRGVTHVANYIVNEVQEVYRLQGVKINDKHIETIIRQMLRKCTIMHGGDTDFL
AGEQIEVARVNIANRDLEAQGKIPAKFEIQLMGITKASLATESFISAASFQETTRVLTDA
AVNGKSDELRGLKENVIVGRLIPAGTGFSYHQERMARRKQSKVVEEQTVSAEEATQALTD
ALNADLSGNQ
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaagcaacaaaataagaccgaagaattcgatgcaatt
cgcattggtcttgcttcaccagacatggttcgttcgtggtcatacggtgaagtaaagaaa
cctgagactattaactaccgtactttcaagcctgagcgcgatggcttattctgtgcccgt
attttcggcccagtgaaagattatgaatgcttatgtggtaaatataagcgtcttaaacac
cgcggtgtgatctgtgagaagtgtggcgttgaagttacactcactaaagtgcgacgcgat
cgtatgggtcatattgaccttgcgagcccagttgcgcatatttggtttttaaaatcatta
ccgtcacgtatcggcttaatgctagatatgacgcttcgtgatattgaacgtgttctttac
ttcgaatcattcgtagtaactgagcctggtatgacaacgcttgagcgtggtcagctatta
ggtgaagaagaatacttagatgcacttgaagagcatggtgatgaatttgaagctaagatg
ggtgctgaagcagttttagacttgcttcgtgaactcgatcttgcacaattaattgctgaa
atgcgtgaagagttaccaacaattaactctgaaactaagcgtaaaaaaatcaccaaacgt
cttaagttaatggaatcgttccaccaatcaggtaacaaccctgagtggatgatcatgaca
gtacttccagtattgccacctgatctacgcccattagtaccactagacggtggtcgtttt
gcgacgtctgatctaaatgacctttaccgtcgtgttattaaccgtaataaccgtcttaag
cgtctattagatttagcagcaccagatattatcgtacgcaacgaaaaacgtatgttacaa
gaagcggtagatgcgctacttgataacggtcgtcgtggtcgtgcaattacaggttctaac
aaacgtcctcttaaatctcttgccgatatgatcaagggtaagcaaggtcgtttccgtcag
aacttacttggtaagcgtgtggattattcaggccgttctgtaattacagtgggtcctaca
cttaagcttcaccaatgtggtcttcctaagaagatggcacttgagctattcaaaccattt
atctatggcaaattagagcgtcgcggcatggctacgacaatcaaagctgcgaagaagatg
gttgaacgtgaaatgccggaagtatgggatgtgcttgacgaagtaattcgtgaacatcca
gtattacttaaccgtgcaccaacacttcaccgtttgggtatccaagcgtttgaacctgtg
cttatcgaaggtaaagcgattcatttgcatccattagtatgtgcggcctacaacgccgat
ttcgatggtgaccaaatggcggtacacgtaccgctaacaattgaagcgcagcttgaagct
cgtgccttaatgatgtctacaaacaacattctatctcctgcgaatggtgagccaatcatc
gttccttcacaggatgttgtattgggtctttattacatgactcgtgaccgtattaacgct
aaaggcgaaggcgcgatatttaaagatccaaaagaagcagaaaaagcataccgtagtggc
aatgcagaccttcacgcaattgtgaaagtacgtattagtcaatcagttaaaaacgaaaac
ggcgtagtagaagatactatcactgttatcgatacaactgttggtcgtgcaattctgtcg
ctaattttaccaaaaggcatgccgtatgagtcaatcaatcagccgctaggtaaaaagcag
atttctggcttaattaatgagtgttaccgtcgtcttggtcttaaagacacagttatgttt
gctgaccaaattatgtacaccggtttccattatgcaatgaagtcaggtgtttcaatcggt
attgatgacttagttatcccaccggttaaagcgcagatcattgaagcagctgaagctgaa
gttactgaaatcaaccaacaattccaatcaggtcttgtaacggctggtgaaaagtacaat
aaagttatcgatatttggtcacgtgtaaatgaaaacttatcacgtgagatgatgtctaac
ttgtcgaaagacacagttattaatgcacaaggtgaagaagtagagcaagcgtcatttaac
tcagtgtttatgatggccgactcaggtgctcgtggtagtgctgctcagatccgtcagttg
gcgggtatgcgtggtctaatggcacgtccagatggttcaatcatcgagacaccaatcaca
gctaacttccgtgaaggtctaaacgtacttcagtacttcatctcaacgcatggtgcgcgt
aaaggtcttgccgatacagcacttaaaacagctaactctggttacctaacgcgtcgtcta
gtagacgttgcacaagatttggtaatcaatgaagatgactgtggcacagaagatggctta
acaatgaaaccgcttattgaaggtggtgatgttgtagaagcgcttcgagaacgtgttcta
ggtcgtgttgttgctgaagatattgttattccaggtactaatacagtactagttgagcgt
aacattatgcttgacgaaaaactgtgtgaccttttagaagagcattcagtagatgaagtt
cgcgtacgttctgttatcacgtgtgataatgactttggtgtttgtgctaactgttacggt
cgtgacctagcacgtggccatatcatcaacgcaggtgaatcagtaggtgttatcgcggca
caatcaattggtgagccaggtacacagttaacgatgcgtacattccacatcggtggtgcg
gcatctagagcgtctgctgagaataatgtacaagttaaaactaacggtacattaaagctt
cacaacgctaagtacgtattaaatacagacggtaagattgctattatttcgcgttctacg
gaaattactatcattgatagttatggccgtgaaaaagagcgttataaagtaccttacggt
gcagtattaacagtacaagacaatgcagaagttcaaggtaacgacatcgttgctacttgg
gacccgcatagtcacccaatcgtacttgagcataagtcaaaagtatcgttcagcgatatc
gatgactcgaatactgaaacacagacagatgaactaaccggtttaacccgtatagttgtt
aaagatctttctaaagcgaatgcgaaagaacctaagcttatcattgaaagtgaagagcgc
ggcttacaagaaacacgtcttccttcattcactacgattgaagtaattgacggcacgaca
gtaaacccaggtgacgtattagcacgtattccgcaagaagggtcgaaaactcgtgatatc
acgggtggtctaccacgcgtagccgatttattcgaagctcgtaaaccgaaagaaccagct
attttagctgaagttaccggtacaattagctttggtaaagagactaaaggtaagaagcgt
ttagttattactccagatgaaggtgatcattacgaagagatgatccctaaatggcgtcaa
cttaacgtgtttgaaggtgaacgagtgtctaaaggtgaagttatcgccgatggtccagaa
tcaccgcatgacatcttacgcttacgtggtgtgactcatgttgctaactacattgttaac
gaagtgcaagaggtttaccgtttgcaaggcgttaagatcaatgacaagcacattgaaact
attattcgtcaaatgttacgtaaatgtaccattatgcacggtggtgatactgacttctta
gccggtgagcaaattgaagtggcacgcgttaatatcgcaaaccgcgaccttgaagctcaa
ggtaagatcccagctaagtttgaaatccagttaatgggtatcacaaaagcatcactagca
acagaatctttcatctctgcagcctctttccaagagacaacacgtgttttaaccgacgca
gcagtgaatggtaagagcgatgagttacgcggtctgaaagaaaacgtaatagtgggtcgt
ttgatcccagccggtaccggcttttcgtatcatcaagaacgtatggctcgccgtaaacaa
agcaaagtagtagaagagcagactgtaagtgcagaagaggcaactcaagcgctaactgat
gctttaaatgcggatttatctggaaatcaataa
DBGET
integrated database retrieval system
