Pseudoalteromonas nigrifaciens: PNIG_a0609
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Entry
PNIG_a0609 CDS
T05271
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
png
Pseudoalteromonas nigrifaciens
Brite
KEGG Orthology (KO) [BR:
png00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
png03009
]
PNIG_a0609 (srmB)
Enzymes [BR:
png01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PNIG_a0609 (srmB)
Ribosome biogenesis [BR:
png03009
]
Prokaryotic type
rRNA helicases
PNIG_a0609 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
AAA_30
UvrD-helicase
AAA_22
AAA_11
SAM_3
SNF2-rel_dom
PhoH
Phage_integrase
Motif
Other DBs
NCBI-ProteinID:
ASM52908
UniProt:
A0AAC9XWR6
LinkDB
All DBs
Position
I:complement(592120..593346)
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AA seq
408 aa
AA seq
DB search
MQFSEFDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI
QYLLDFPRRDPGFARVLVMTPTRELAYQIHEQCELLAKRTNLKIGVVTGGINYGTHKEIF
EKNNDILIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNRRQ
CFLFSATLEGDSVERFAETTLNDPALLEAESSRKEKAKIHQWVHLADDYHHKLELLVNTL
NGPDVTKAIVFVKTRERLETLIGELTTNDVKAAWLRGEMPQDKRMKAMENFHSGKTRILV
ATDVAARGIDVADISHVINFDLPRTADIYVHRIGRTGRAGKKGIAISLVEAHDIGILYKI
ERYIEQKLKRRVIKGLEPKHKEAKPPAKKRKDPVKMKAKKKAKVKKKK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttctgaatttgatcttgataacaagctactcgacgccattaataaaatgggt
tacgaaacgccaaccagcattcaacaacaagctattcctgaagcacttcaggggcgtgac
attttagcatctgcgcctacaggtacaggtaaaacagccgcctttttaattccggctatt
caatatttattggattttccgcgtcgtgatcctggttttgcgcgcgtattagtaatgacg
ccaactcgtgagctagcttatcaaattcatgaacaatgcgaactacttgctaaacgtact
aaccttaaaattggggtagtaacaggcggtattaactatggtacgcataaagagattttt
gaaaaaaataatgacattttaatcgccaccccagggcgtttaatggaatatttagaaacc
gaaaactttcatgctgaacacgtagaaatgcttattattgatgaagccgaccgcatgcta
gacatgggctttaaaaaagaaatgagccgtatttgtgatgaagctaaaaatcgtcgtcag
tgctttttattttcagcaacccttgaaggcgacagtgttgaaagatttgctgaaacaacg
ctaaacgatccagcattgcttgaagctgaatcgtcacgcaaagaaaaggctaaaattcac
cagtgggtacatttagccgacgactatcatcataaacttgagctgttagttaataccctt
aatggcccagacgtaactaaagccatagtgtttgttaaaacccgtgagcgtcttgaaacg
ctaattggtgaactaacaactaacgacgttaaagcagcctggttacgcggcgaaatgccg
caagacaaacgcatgaaagcgatggaaaacttccatagcggcaaaacccgtatattagtt
gctaccgatgtagcggcgcgcggtatcgacgtggctgatattagccatgtaataaacttt
gacctaccacgcacagccgatatatacgtacaccgtattggccgtacgggccgcgctggt
aaaaaaggcatcgctatttcactggttgaagcgcacgatattggcattctttataaaata
gagcgctatattgagcaaaaacttaaacgtcgtgttattaaaggattagagccaaagcat
aaagaagctaagccgccggctaaaaagcgtaaagatccggttaaaatgaaagcgaagaaa
aaagctaaggttaaaaagaaaaagtaa
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