KEGG   Pseudoalteromonas nigrifaciens: PNIG_a1210
Entry
PNIG_a1210        CDS       T05271                                 
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
png  Pseudoalteromonas nigrifaciens
Pathway
png03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:png00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PNIG_a1210 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:png03019]
    PNIG_a1210 (pnp)
   03016 Transfer RNA biogenesis [BR:png03016]
    PNIG_a1210 (pnp)
Enzymes [BR:png01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     PNIG_a1210 (pnp)
Messenger RNA biogenesis [BR:png03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     PNIG_a1210 (pnp)
Transfer RNA biogenesis [BR:png03016]
 Prokaryotic type
  tRNA degradation factors
   PNIG_a1210 (pnp)
SSDB
Motif
Pfam: RNase_PH S1 RNase_PH_C PNPase KH_1 S1_RRP5 OB_RRP5_4th KH_2 S1_2 KH-I_KHDC4-BBP aRib KH_SLS1_2 DUF3016
Other DBs
NCBI-ProteinID: ASM53404
UniProt: A0AAC9XX58
LinkDB
Position
I:1103511..1105637
AA seq 708 aa
MQAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTV
NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVN
PEIQPDMVALIGTSAALAISGIPFSGPIGATRVGYIDGEYVLNPTLKELEESKLDLVVAG
TDNAVLMVESEADVLAEDIMLGAVVYGHEQAQAIITAIKEFKAEAGKPTWDWTAPAKNVS
LEEKVASIAADKVGEAYRITDKVARKEALGVAKDEVVAVLTSELAEGESLDKQEIGKIFG
SLEKKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT
ERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIAAVMPTL
TEFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKFVVL
SDILGDEDHLGDMDFKVAGTAGGITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMD
KAISAPSEELSQFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIA
ATDGESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTER
VNNVTDHLSEGQEVKVKVLEVDRQGRVRLSIKEAMESAAPAADAPTDA
NT seq 2127 nt   +upstreamnt  +downstreamnt
gtgcaagcaattattaaagaatttcaactaggtcaacacacagtgacactagaaactggt
gcaatcgctcgtcaagcagacggcgctgtacttgcaagcattggcgacacttcagtactt
gttactgttgttggtaaacgtgaagcgcaaccaggccaagactttttcccactaacagtt
aactaccaagagcgtatgtacgctgctggtcgtatccctggtggtttcttaaagcgcgaa
ggtcgtcctaacgatggcgaaacacttattgcacgtcttattgaccgtccaattcgtcca
cttttcccaagtggttttgtaaacgaagtacaagttattgctactgttgtttctgttaac
cctgaaattcaacctgatatggttgcgttaattggtacttcagctgcacttgctatctct
ggtattccgttcagtggtccaattggtgctactcgcgttggttacatcgacggcgaatac
gtactaaacccaacactaaaagagctagaagaaagcaagctagacttagttgttgctggt
actgataacgcagtattaatggttgagtcagaagcagacgtacttgcagaagacattatg
ctaggtgcggttgtttatggccatgagcaagctcaagcgatcattacagcaattaaagaa
tttaaagcagaagcaggcaagcctacttgggattggactgcaccagctaaaaacgtatca
cttgaagaaaaagtagcgtctattgctgctgataaagtgggcgaagcttaccgcattaca
gataaagtagcgcgtaaagaagcacttggcgtagctaaagatgaagttgttgctgtatta
acaagcgaacttgctgaaggcgagtctttagataagcaagaaattggtaaaatcttcggt
tcacttgagaagaaaatcgttcgtggccgtatcgctgctggcgaaaagcgtatcgatggt
cgtgaaccagatatgattcgtgcacttgacgtaatgactggcgtattaccgcgtactcac
ggttctgctatctttactcgtggcgaaactcaagcacttgtaacagctacacttggtaca
gagcgtgattcacagttaatcgacgatttaactggcacgcataaaaaccactttatgctt
aactacaacttccctcctttttgtgtaggcgaaactggttttgttggttctcctaagcgt
cgtgaaatcggccatggtaaccttgctaagcgtggtattgcagcagtaatgccaacattg
actgaattcccatattcaatccgtgtagtatctgaaatcactgaatcaaacggttcatct
tcaatggcttctgtgtgtggtacttcacttgcacttatgaatgctggtgtaccaattaaa
gcgtctgttgcgggtatcgcaatgggtctagttaaagaagacgataagtttgttgtactt
tctgacatcttaggtgatgaagatcacttaggcgacatggactttaaagttgcgggtact
gctggcggtattacagcactacaaatggacattaagattgaaggtatcactcaagaaatc
atgcaaattgcgcttaaacaagcaaaagctgcacgtttacatatcttagaagtgatggac
aaagcaatttctgcaccgtctgaagagctttctcagtttgctccacgtatttatactatg
aagatcccacagaagaaaatcgctgaagttattggtaaaggtggcgcaacaattcgtcaa
cttactgaagaaactggcacaacgattgaaatcggtgatgatggcacaatcaaaattgca
gcaactgacggcgaaagcgcagcaaatgcaattagccgcattgagcaattaactgctgag
cttgaagtaggtactatttacgaaggtaaagttgtacgtattgttgattttggtgcgttt
gtaaatattcttcctggtaaagatggtctagtacatatttcgcaaattagtactgagcgt
gttaataacgtgactgatcacctttctgaaggtcaagaagttaaagttaaagtactagaa
gtagaccgccaaggccgtgtacgtctaagtattaaagaagcaatggaatctgcagcacct
gcagctgatgcgccaactgacgcataa

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