Pseudoalteromonas nigrifaciens: PNIG_a1247
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Entry
PNIG_a1247 CDS
T05271
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
png
Pseudoalteromonas nigrifaciens
Pathway
png03030
DNA replication
png03430
Mismatch repair
png03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
png00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PNIG_a1247 (holA)
03430 Mismatch repair
PNIG_a1247 (holA)
03440 Homologous recombination
PNIG_a1247 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
png03032
]
PNIG_a1247 (holA)
03400 DNA repair and recombination proteins [BR:
png03400
]
PNIG_a1247 (holA)
Enzymes [BR:
png01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PNIG_a1247 (holA)
DNA replication proteins [BR:
png03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PNIG_a1247 (holA)
DNA repair and recombination proteins [BR:
png03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PNIG_a1247 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
ASM53435
UniProt:
A0AAC9XWV5
LinkDB
All DBs
Position
I:complement(1132172..1133209)
Genome browser
AA seq
345 aa
AA seq
DB search
MRCYANQLPSELKKGLKPFYLVFGEEPFQEAQCVQQIRAIAKEQGFDEVIKFTLMQGFDW
QEIIAQYQSMSLFSARTIIELDLNQQKPGIIGSNTFKKIIELINPDTILIIKGAKASQDV
QRSAWFKALDKHGLFVPYYPLTGTHVKRWLDEQCQRLSLNMQNEAKLSLISATEGNLLAC
FQELEKLSLLHANALITQQLVMQGLLNQAKFDIFDLSDALLNGQAKQAIKVLNKLASDNT
EVVSILWAITKELNTLIDVQIGLLNGEPIANLFKQKAIWKNQQAPVQSAINRLSIHTLEQ
ISSELAIFDASYKQGNLIAPYQALAHICIKFCQPLNISLPCHPVN
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgcgctgttacgctaatcaattaccgagtgaactaaaaaaaggcttaaaacccttttac
ttagtgtttggtgaagagccttttcaagaagcgcaatgtgtacaacaaattcgcgcaatt
gctaaagagcaaggctttgatgaagtaattaaatttactttaatgcaaggttttgattgg
caagaaattatagctcaatatcaaagtatgtcgctgtttagcgcccgcactattattgag
cttgatttaaaccagcaaaagccaggaattattggcagcaacacgtttaaaaaaattatt
gagctaataaaccccgataccattttaattattaaaggcgctaaagccagccaagacgta
caacgcagtgcttggtttaaagcgcttgataaacacggtttatttgtaccttactatccg
cttaccggtacgcatgtaaagcgttggttagatgagcaatgccagcgtttatctcttaat
atgcaaaatgaggcaaagctgagtttaattagcgccactgaaggtaatttactggcgtgt
tttcaagaactcgaaaaactctcattactacacgccaatgcgctcattacacaacaatta
gtaatgcaagggctattaaatcaagccaagtttgatatttttgatttaagcgacgcacta
ttaaacggccaagctaaacaagcaataaaagtgctgaataaactggccagcgataacacc
gaagtggtgagtattttatgggcaataaccaaggagcttaacaccttaattgatgtgcaa
attggtttacttaatggcgagcccattgctaatttatttaagcaaaaagcaatatggaaa
aaccaacaagcgccagtacaaagtgctataaacaggttaagtattcatacccttgagcaa
attagctctgagcttgcaatatttgacgccagctacaaacaaggtaacttaattgcgccc
tatcaagcactcgcgcatatttgtattaagttttgccaaccgctgaatatttcgctgcca
tgtcatcctgttaattaa
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