Pseudoalteromonas nigrifaciens: PNIG_a1792
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Entry
PNIG_a1792 CDS
T05271
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
png
Pseudoalteromonas nigrifaciens
Brite
KEGG Orthology (KO) [BR:
png00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
png03032
]
PNIG_a1792 (topA)
03400 DNA repair and recombination proteins [BR:
png03400
]
PNIG_a1792 (topA)
Enzymes [BR:
png01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PNIG_a1792 (topA)
DNA replication proteins [BR:
png03032
]
Prokaryotic type
DNA Topoisomerases
PNIG_a1792 (topA)
DNA repair and recombination proteins [BR:
png03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PNIG_a1792 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_LysW
Toprim_4
Toprim_2
DUF2399
Motif
Other DBs
NCBI-ProteinID:
ASM53891
UniProt:
A0AAC9UJF9
LinkDB
All DBs
Position
I:1573049..1575766
Genome browser
AA seq
905 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNDFIVKSSIGHVRDLPTSGSGKNKVPATKTPAEVRKLP
PEEKAAYKKQRDYSNLVARMGIDPDKGWEPHYEILPGKEKVVQELKKLAENADQIYLATD
LDREGEAIAWHLQEIIGGEPAKYKRVVFNEITKNAIQQAFETPGELNTDMVYAQQTRRFL
DRVVGFMVSPLLWAKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNAES
ELRLEVAKQAGKPFKPVNEAQASAAVKSLENAEYKVISVDEKPSKSRPSAPLITSTMQQA
ASTRLGYGVKKTMMLAQRLYEGGYITYMRTDSTNLSKDAVAMCREYVTEQFGEKYLPKDP
INYSSKGNAQEAHEAIRPSSVTVLSGHIEGVDADAKKLYELIWRQFVACQMVPAEYDLTT
LTVAANDFQLKAKGRVLRFDGWTKVQPAIRKKNEEDQSLPAVTVGETLTLIELDPKQHFT
KPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFFAEKMGEIVTDRLV
ENFEDLMNFDFTAKMEGRLDDIAEGKRIWTEVLDKFYADFSTQLTVAKDEPENGGMRLNE
MVETDIECPTCSRKMGIRTASTGVFLGCTGYNLPPKERCTTTMNLVSGDEAVAADSADAE
DLETETLMQMKRCPICETAMDSYLIDETRKLHVCGNNPACHGHVVEEGTFKIKGYDGPII
ECDKCGADMELKSGRFGKYFGCNNDECKNTRKLLKNGEAAPPKEDPVHIPELECEKSEAY
FVLRDGAAGIFLAANTFPKSRETRAPKVEELQRFRDRISPKFYYLADAPAKDPDGNLAVV
RYSRKNKSQYVMTEVDGKATGWTAHYEGGKWVEEAKKKAAPKKKAAAKKAPAKSKAKAKV
KKDDK
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctagtaattgtagagtcacctgctaaggctaaaacaattaataaatat
ttaggtaatgacttcatcgtaaagtccagtattggacacgtgcgagatttacctacttca
ggttctggaaaaaacaaagtgccagcgactaaaacgccggctgaagtgcgtaaattacca
cctgaagagaaagcagcgtataaaaagcaacgagactattctaacttagtcgcgcgtatg
ggcattgaccctgataaaggctgggaaccacattacgaaatactgccaggaaaagaaaag
gtagtacaagagcttaaaaagcttgccgaaaacgctgaccaaatatatctcgcaacggat
ttggatagagaaggggaagcaattgcttggcaccttcaagaaattattggcggtgagcct
gcaaaatataagcgtgtggtttttaacgaaattacaaaaaacgcaattcagcaagcattc
gaaacacccggtgagcttaataccgatatggtatatgcacagcaaacacgtcgtttttta
gaccgtgttgttggttttatggtatctcccttactgtgggcaaaagtggcacgtggactt
tcggctggacgcgtacaatcggtagcagtgcgcttactcgttgagcgtgaacgcgaaatt
aaagcgtttatacctgaagagttttgggatattcatgctgacgttaaaaatgcagagtca
gagttacgcttagaagtagccaaacaagcaggcaagccatttaagccagtaaatgaagct
caggcaagcgcagcagttaaaagccttgagaatgcagaatataaagttataagcgttgac
gaaaaaccaagtaaaagtcgcccaagtgcgcctttaatcacctcaactatgcaacaagca
gccagtacacgtttaggctatggcgttaaaaaaaccatgatgctagcgcagcgcttgtac
gaaggcggttacattacctatatgcgtaccgactcaactaatctgtcaaaagatgcggtt
gctatgtgtcgcgaatatgtaacagagcaatttggtgaaaagtacttacctaaagatcct
attaattatagctcaaaaggcaatgcacaagaggcgcatgaagcaattcgtccatcaagt
gtaactgtgctttcggggcatattgaaggggttgatgccgatgctaaaaaactatatgag
ctaatttggcgtcaatttgtagcgtgccaaatggtacctgcagaatacgacttaacgaca
ttaacggtagcagcaaatgacttccaactaaaagccaaaggccgtgtgctacgctttgat
ggttggactaaagtacagcctgctattcgtaaaaagaacgaagaagatcagtctttacct
gcagtaacagtaggcgaaacattaacgttaattgaacttgaccctaagcaacactttact
aaaccgccagcgcgttttagcgaagcgagtttagtaaaagagcttgaaaaacgtggtatt
ggccgcccatctacttatgcatctattatttctactattcaagatcgcggttatgtacgg
gttgaaaaccgtcgtttcttcgctgaaaaaatgggtgaaatagttaccgaccgcttagta
gaaaattttgaagacttaatgaactttgactttactgccaaaatggaaggtcgtttagat
gatatcgccgaaggcaagcgcatttggaccgaagtactcgataagttttatgccgacttt
tcaacgcaattaactgttgcgaaagacgagcctgaaaatggcggaatgcgtcttaatgaa
atggtcgaaactgatattgaatgtccgacttgtagccgtaaaatgggtatccgtaccgca
tctactggcgtgttcttagggtgtactggttataacttaccgcctaaagagcgttgtaca
acaacgatgaacttagtatcgggcgatgaagcagttgccgcagacagtgccgatgcagaa
gatcttgaaaccgaaacattaatgcaaatgaaacgttgcccaatttgtgaaacggcaatg
gattcatacctaatcgacgaaacccgtaaattacatgtatgtggtaataacccagcgtgt
catgggcatgtggttgaagagggtacgtttaaaattaaaggttacgacggccctattatt
gaatgtgataaatgtggcgctgatatggaattaaaatcaggtcgatttggtaagtatttt
ggctgtaacaatgacgagtgtaaaaatacccgtaagttattaaaaaatggcgaagctgcg
ccaccaaaagaagatcccgttcatattcctgaattagaatgtgaaaagtctgaagcctat
tttgtattacgtgacggtgctgcaggtattttcttagcagcaaatacgttccctaaatca
cgagaaacacgcgcccccaaagtagaagagttacagcgttttagagatcgtatttcgcct
aagttttactacctagctgatgcaccagctaaagatcctgatggtaatcttgctgttgtg
cgttacagtcgtaagaataaatcacagtatgtaatgactgaggttgatggcaaagcaact
ggttggacggcacactacgaaggtggtaaatgggtagaagaggctaagaaaaaagccgcg
cctaaaaagaaagctgccgctaaaaaagcgcctgctaaaagtaaagcgaaagcaaaagta
aaaaaagacgataaataa
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