Pseudoalteromonas nigrifaciens: PNIG_a2439
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Entry
PNIG_a2439 CDS
T05271
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
png
Pseudoalteromonas nigrifaciens
Pathway
png03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
png00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PNIG_a2439 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
png03019
]
PNIG_a2439 (rne)
03009 Ribosome biogenesis [BR:
png03009
]
PNIG_a2439 (rne)
Enzymes [BR:
png01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PNIG_a2439 (rne)
Messenger RNA biogenesis [BR:
png03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PNIG_a2439 (rne)
Ribosome biogenesis [BR:
png03009
]
Prokaryotic type
rRNA processing factors
PNIG_a2439 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ASM54456
UniProt:
A0AAC9UIX3
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All DBs
Position
I:2180062..2183277
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AA seq
1071 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVEY
GADRHGFLPLKEIARTYFPAGYTFHGRPNIRDVIKEGQEVIVQVDKEERGQKGAALTTFI
SVAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSRLELPKGMGLIVRTAGVGKSFEEL
NYDLKALLVHWEAIGVAADSAKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEA
KAHIERFRPDFMSRVKLYQGDTPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSKATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVEN
RLKDAVRPDRARVQIGKISRFGLLEMSRQRLRPSLGEASQGPCPRCSGQGTIRSNESIAL
SILRLIEEEAIKDNTAQVNAQVPVAVAAYLLNEQRRSVHRMEKQHKCDIVIIPNQHMETP
HYEVMRLRKDETIETVSYGQIVAPEPEAFEMSKSPVAPVREEPMLKGVVMPAAPAPQAAP
ANVVAPAETKAQSGLLDAIGKWFKSLFASETVEVKKEETQKQQQETRDNTRNNDNRRRNN
NNQRRRNNPRSKPRTERTADEEVKTNSVSTPEAATQTNENQERGENRNKRRRNPNSRKRP
EPRTEEKDAVKVDAPAKAEAETKPVQAEEPKDQKPKVRRQRRNLRKKVRLQDENAEQVQT
TDETPVQATEKETPVAQEQAPVVEKQTQTAAEKTAHIKEEKVEDVDSNDETPTTEDEQEQ
TRTRSRRSPRHLRASGQRRRRPEGEGNEAKSDEAPAFVPVADQAAAEYEAELKAKSAATP
ADAAQQVEQAVAVEDLAKVEAVEEPVQTEEPAKVETPVVTEEPAKVETPVAAEEPAKVET
PVAAEEPAKVETPVVTEEPAKVETPLVTEEPAKVETPVVTEEPTKVEAPVVTEEPAKVEA
PVVTEEPTKVETPVVTEEPAKVETPVVTEEPAKVETPVVTAAPHVKTAIAQGSASAPMAQ
PTPVADSEVKHTSVAMAHDKRELVPDSGLRAGSIKPAGRASSTMTKTMSVD
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctaatcaatgcaacgcagcaagaagaaatgcgcgtagcactggttgac
ggccagcgcctatatgatttagatatagaaagcccaggtcacgaacagaaaaaagccaat
atttataaaggcaaaatcactcgcattgaaccatctcttgaagcagcatttgttgaatac
ggtgctgatcgtcatggtttccttcctttaaaagaaattgcccgtacttacttcccagct
gggtatactttccatggccgtccgaatattcgtgacgtgatcaaagaaggtcaagaagtt
atagtacaagttgataaagaagagcgtggccaaaaaggcgcagcacttactacctttatc
agcgttgccggtagctacttagttttaatgcctaataatcctcgtgctggcggtatatct
cgtcgcattgaaggtgatgagcgtactgaactaaaagagtcacttagtcgtttagaactt
cctaaaggtatgggcttaattgttcgtactgctggtgttggcaaatcgtttgaagaatta
aactacgatttaaaagccttacttgttcattgggaagcaattggtgttgcagccgacagt
gctaaagcgccgtttttaatacaccaagaaagcaatgtaatatttcgtgcaattcgcgac
tatttacgtcgtgatattggcgaaatattaattgataaaccacgtgtttttgaagaagct
aaagcgcatattgaacgttttcgccctgactttatgagccgtgttaagctttatcaaggt
gatacgccattatttacgcattaccaaattgaaagccaaattgagtctgcgttccagcgt
gaagtacgcttgccttcaggtggttcaattgtaattgatcctacagaagcattaacctct
atcgatattaactcgtctaaagcaacaaaaggcggcgatattgaagaaacagcacttaat
actaacttagaagcagcagatgaaattgcacgtcaattacgtcttcgcgacttaggtggc
ttaattgttatcgattttatcgatatgacaccaccacgccatcagcgtgaagtagaaaac
cgtctaaaagacgctgttcgtcctgatcgtgctcgtgtgcaaattggtaaaatttcacgt
tttggtttactcgaaatgtcgcgtcagcgtctgcgcccttcattaggtgaagcaagccaa
ggcccatgtccacgttgtagtggtcaaggtacgattcgttctaacgaatcaattgcactg
tctattttgcgtttaattgaagaagaagcaattaaagacaacactgcacaagttaatgct
caagtgcctgttgctgttgccgcttatttattaaatgaacagcgccgtagtgttcatcgc
atggaaaaacaacataagtgcgacatagtgatcattcctaatcaacacatggaaacacca
cactacgaagtaatgcgcttacgtaaagacgaaacgattgaaacagtaagctatggacaa
attgttgctccagagcctgaagcatttgaaatgtctaagtcgcctgtagcaccagtacgt
gaagagccaatgttaaaaggcgttgtaatgcctgcagcaccagctccacaagcggctcct
gctaacgttgttgcccctgctgaaactaaagcgcaaagcggtttactggatgcaattggt
aagtggtttaaatctttattcgccagcgaaaccgttgaagtgaaaaaagaagaaacacaa
aaacagcaacaagaaacgcgcgataatacgcgtaataacgataatcgtcgccgtaataac
aacaatcagcgtcgccgtaataaccctcgttctaagccacgcactgagcgtactgcggat
gaagaggttaaaactaactctgtatcaacacctgaagcagcaacgcaaactaacgagaac
caagagagaggcgagaatcgcaataagcgtcgtcgcaatcctaattcacgtaagcgccca
gagccacgcactgaagagaaagatgcagtaaaagttgatgcacctgcaaaagcagaagct
gaaactaagccagttcaagccgaagagccaaaggatcaaaaaccaaaggttcgtcgccag
cgtcgtaatttgcgtaaaaaagtacgcctgcaagatgaaaatgctgagcaggtacaaaca
acagatgaaacacctgtacaagctacagaaaaagaaacaccagtagcccaagagcaagca
cctgttgtagaaaagcaaactcaaacagcggcagaaaaaacagctcatattaaagaagaa
aaagttgaagatgttgattctaacgatgaaacacctacaaccgaagacgagcaagagcaa
actcgtacacgttcacgtcgctcacctcgtcatcttcgtgcatcaggtcagcgtcgtcgt
cgccctgaaggtgaaggcaatgaagctaagtcagatgaagcaccggcatttgttcctgtt
gccgaccaagctgctgcagagtatgaagcagagcttaaagctaaatctgcagctacacct
gcggatgcagcgcaacaagttgaacaagccgttgcggttgaagacttagccaaagttgaa
gctgtagaagagccagtacaaactgaagagccagctaaagttgaaactccagttgtaact
gaagagccagctaaggttgaaactccagtagccgctgaagagccagctaaagttgaaacg
ccagtagcagctgaagagccagctaaagttgaaaccccagtagttactgaagaaccagct
aaagttgaaactccattagtaactgaagagccagctaaagttgaaaccccagtagttact
gaagagccaactaaagttgaagcgccagtggtaactgaagagccagctaaagttgaagcg
ccagtggtaactgaagagccaactaaagttgaaactccagtggtaactgaagagccagct
aaagttgaaactccagtggtaactgaagagccagctaaagttgaaactccagtagtaact
gcagcaccacatgttaaaacagcgatagctcaagggtcagcaagtgcgccaatggcacag
cctacccctgtagctgatagcgaagtaaaacatacatctgttgctatggctcacgataaa
cgtgaactagtgccagacagtggtttgcgtgcgggttcaatcaaacctgctggtcgtgca
agttctacaatgactaaaacaatgagtgttgattaa
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