Pseudoalteromonas nigrifaciens: PNIG_a2671
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Entry
PNIG_a2671 CDS
T05271
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
png
Pseudoalteromonas nigrifaciens
Pathway
png03030
DNA replication
png03430
Mismatch repair
png03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
png00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PNIG_a2671 (dnaE)
03430 Mismatch repair
PNIG_a2671 (dnaE)
03440 Homologous recombination
PNIG_a2671 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
png03032
]
PNIG_a2671 (dnaE)
03400 DNA repair and recombination proteins [BR:
png03400
]
PNIG_a2671 (dnaE)
Enzymes [BR:
png01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PNIG_a2671 (dnaE)
DNA replication proteins [BR:
png03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PNIG_a2671 (dnaE)
DNA repair and recombination proteins [BR:
png03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PNIG_a2671 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
NAGPA
Motif
Other DBs
NCBI-ProteinID:
ASM54663
UniProt:
A0A379H8W2
LinkDB
All DBs
Position
I:complement(2425602..2429093)
Genome browser
AA seq
1163 aa
AA seq
DB search
MAAPDFVHLRVHSDFSMVDGLAKTKPIVAKAQELQMPAIAITDQMNLCGLVRFYETAHST
GIKPIVGADFWLRSPEFENEPSRITILAKDNQGYKNLTLLISKAYQRGHVFHRPVIDRDW
LIELKAGLIILSGAKDGDLGKALLKNNPSVIESVVSFYKQHFSDNYYLELVRTNRPLEED
YLHMAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDKRRPKRFSEEQYL
KTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGTYFLPDYPTGSLKIEDFLVKVSQDGL
EERLQFLFPDEQERKEKRVEYDERLDIELGVINEMGFPGYFLIVMEFIQWSKDNNIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERISMPDFDVDFCMDRRDEVIDHVSA
LYGRNAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMIPGDPGMTLAKAFDIEPR
LQEAYDGDNEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTITDFAALYCDDEGKFPVTQ
FDKNDVETAGLVKFDFLGLRTLTILQWALDMTNERLARTGKEPVDINTIPLDDKKSIDLL
LRAETTAVFQLESRGMKDLVRRLKPDSFEDMIALVALFRPGPLQSGMVDNFIDRKLGREE
ISYPDAQYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSTFEDGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHHPA
EFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAGEFKFTVNLQGEIVYGIGAIKG
VGEAPVDAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKLIYSGALDQLGPEKTQSGR
ATLLASLKSAMRAADQHNKAELLGQSDLFGLLATEPDEVEQAFIKATGLTDNEWLDGEKE
TLGLYLTGHPINQYRRELKYYTSGKLVDLQPTNRDVVSTAAGLVISARVLINKKGNRWAL
ITLDDKSARIDVRLYSDEFEKYQDMLQVNNILVISGQVSFDNFSGGITMTAREINTIAQA
REKRIKAIKMTLNMVQVEAGFFDKLQKVLEPYKMGTCPIKVYYQRPDALAQLTLGIEWCV
TPSDDLIHKLSLMAAQDVELEFN
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggcagctccagattttgttcacttaagagttcactctgatttttcgatggttgatggc
cttgccaaaaccaagccaattgtagccaaagcacaagaactacaaatgccggcaattgct
attaccgaccaaatgaacttatgtggcttagtgcgtttttacgaaacagcccacagcaca
ggtataaaacctatagtgggtgctgacttttggctacgcagccctgagtttgaaaacgag
ccaagccgcattactattttagcaaaagacaatcaaggttataaaaacctcactttatta
atatctaaagcatatcagcgcgggcatgtatttcatcgcccggtgattgatcgtgattgg
ctaatagaacttaaagccgggttaataatactctctggtgcaaaagacggtgatttaggt
aaagcgttattaaaaaataatccgagtgttattgaatcggttgttagtttttataaacag
cattttagtgataactactaccttgagctggtgcgaactaatcgaccgcttgaagaagat
tacttgcacatggcggtagagcttgctgctaaagagcaattacccgttgtggccactaac
gaagtggtgtttttaaaaccagaaaactttgaagcacacgaaattcgcgtggctattttt
gatggttatacactggatgataaacgccgccctaaacgattttcagaagagcaatactta
aaaacgccagagcaaatggctgagttatttagcgacattccagaggcattacaaaacacc
gtagaaatagccaaacgctgtaatgtaacggtgcagcttggcacttactttttgccagat
tatccgaccggctcacttaaaattgaagactttttagttaaggtgtcacaagacggtctt
gaagagcgattgcagtttttatttcctgatgaacaagagcgtaaagaaaaacgcgttgaa
tacgatgagcgtctagatatagagcttggtgtaattaacgaaatgggattcccaggttat
ttcttaatcgtaatggaatttattcagtggagcaaagataacaatattccagttggccct
gggcgtgggtcaggtgcaggatcactggtagcctacgcgcttaaaattaccgaccttgat
ccattggaatttgacttgctgtttgagcggtttttgaacccagaacgtatttcaatgccc
gatttcgacgtcgatttttgtatggataggcgcgatgaggtgattgatcatgtatcggcc
ttgtatgggcgtaacgcggtatcgcaaattattacctttggaaccatggcggcaaaagcg
gtaatacgcgatgttggccgagtattaggtcacccgtacggttttgttgatcgtatttca
aaaatgatcccaggcgatcctgggatgacacttgccaaggcatttgatatagagccacgc
ttgcaagaagcctacgatggcgacaatgaagtaaaagatttaatcgacatgtgtcgtatt
ctcgaagggtgtacacgtaacgccggtaaacatgcgggtggggtagtaatatcgcccacc
acaattaccgactttgctgctctttattgcgatgacgaaggtaagtttccggttactcag
tttgataaaaacgatgtagaaactgccggtttagttaagtttgactttttaggcttacga
acgctgactatattgcagtgggcgctcgacatgaccaacgagcgcttagcgcgcaccggt
aaagaaccagtagatattaatactattccgttggatgataaaaagagtattgacttacta
ctgcgcgccgaaacgactgcggtgtttcagctagaatcaaggggcatgaaagacttagta
aggcgcttaaagcccgacagctttgaagatatgattgctttagtagccttgtttcgaccc
ggtccgctgcaatcgggcatggtagataactttatcgaccgaaaattaggtcgcgaagaa
atctcataccccgatgcgcagtatcagcacgaaagcttaaaacctattttagagccaacc
tacggcattattttgtatcaagaacaagtaatgcaaatagcccaagtattagcaggctat
acactaggcggcgccgatatgctgcgccgtgctatgggtaagaaaaagcccgaagaaatg
gcaaaacagcgttcaacatttgaagatggtgcgcgaaataacggcattgacggcgaacta
gcaattaagatcttcgatctggtagaaaagttcgcaggttatggttttaataaatcgcac
tccgctgcgtatgcattagtgtcgtatcaaacactgtggatgaaaacccatcatccagca
gagtttatggctgcggtaatgtcggccgatatggataataccgacaaaatagttattttg
gtggatgaatgtgaaaacatgaaactcaccttgctcccgcctgatgtgaatgcaggcgag
ttcaaatttacagtaaacctgcaaggcgaaattgtttacggtattggcgctattaaagga
gtaggtgaagcacctgtagatgcaattttagaagcacgcgctaagggcggaccatttaaa
gatttatttgatttttgtgcccgtgttgatttaaaacgcttaaataaacgtgtaaccgaa
aaacttatttattcaggggcacttgatcagctaggccctgaaaaaactcaatcagggcgc
gccacgttattggcaagcttaaaaagtgccatgcgcgccgccgatcagcacaataaagca
gagttattagggcaaagtgatttatttggcttattagccactgaacccgatgaagtagag
caagcctttattaaagccacaggactcaccgataacgaatggctcgatggcgaaaaagaa
acccttggtctttatttaaccggtcatccaataaatcaatatcgccgcgagctaaaatat
tataccagtggtaaattggtcgatttacagcctactaatcgcgatgtagtatctacagct
gcagggcttgtaatttcggccagagtgcttattaataaaaaaggaaataggtgggcatta
ataactttagatgacaagagcgcccgcattgatgtacgcttatattcagatgagtttgaa
aaataccaagatatgctccaagttaataatattttggtgatatctggacaggtcagcttt
gataacttctctggtggtattacaatgaccgccagagaaataaacaccattgctcaagcg
cgtgaaaaacgtattaaagcgattaaaatgacgctgaacatggtgcaagtcgaggcaggt
ttcttcgataaattacaaaaagtactcgaaccatataaaatgggaacgtgtccgatcaag
gtttattaccaacgcccagatgcattggcgcaattaaccctagggatcgaatggtgtgtt
acgccaagtgacgacttaattcataagttatcgctaatggcagcgcaagatgtagaacta
gaatttaactaa
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