Pseudoalteromonas nigrifaciens: PNIG_a3561
Help
Entry
PNIG_a3561 CDS
T05271
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
png
Pseudoalteromonas nigrifaciens
Pathway
png03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
png00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PNIG_a3561 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
png03021
]
PNIG_a3561 (rpoA)
03400 DNA repair and recombination proteins [BR:
png03400
]
PNIG_a3561 (rpoA)
Enzymes [BR:
png01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PNIG_a3561 (rpoA)
Transcription machinery [BR:
png03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PNIG_a3561 (rpoA)
DNA repair and recombination proteins [BR:
png03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PNIG_a3561 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
ASM55439
UniProt:
A0AAC9UKC9
LinkDB
All DBs
Position
I:complement(3281834..3282820)
Genome browser
AA seq
328 aa
AA seq
DB search
MQGSVTEFLKPRLVDIDAINPTRSKIVLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSAKEGVQEDIIEILLNLKGLAVTLEGKDEVFLTLAKSGVGPVTASDIQHDGD
VTIANPDHVICNLTTNNSEISMRIRVERGRGYVPASSRLSSDDDERPIGRLLLDASFSPV
ERIAYSVESARVEQRTDLDKLIIDMETNGTLDPEEAIRRASTILAEQLDAFVDLRDVTEP
EEKEEKPEFDPILLRPVDDLELTVRSANCLKAEQIQYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASLAE
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgttacagaatttctaaaaccaaggttagtcgatatcgacgctatcaac
ccaacacgttctaaaatagttttagaaccacttgagcgtggcttcggtcacactttgggt
aatgccttacgccgtatactgctttcatctatgcctggatgtgcagtaactgaagttgaa
atcgacggtgtattgcatgagtacagcgcgaaagaaggcgttcaagaagacatcattgaa
atactattaaacctaaaaggtttagcagtaacgttagaaggcaaagatgaagtttttctg
accctggctaaatctggtgtaggccctgtgactgcgtcagatattcagcacgatggcgat
gtaacaattgctaacccagatcatgttatttgtaatttaacaacaaataacagcgagatc
agcatgcgtattcgtgttgaacgtggtcgtggttatgtgccggcatctagtcgtttatcc
tctgatgacgatgagcgtccaattggtagattgttgcttgatgcatcatttagcccagtt
gaacgtattgcgtactcggttgaatcagctcgagttgagcaacgtacagatttagacaag
ttaatcattgatatggaaacaaacggcactttagatccagaagaagcgatccgccgtgcg
tctactatcttagctgagcaattagatgcattcgtagatttacgtgatgtaactgagcca
gaagagaaagaagagaagccagaattcgatcctattctacttcgtccagttgatgatctt
gaactaacagtacgctcagcaaattgtttgaaagccgagcaaattcaatatatcggtgat
ttagttcagcgcactgaagttgagcttcttaaaacgcctaatttaggtaagaagtctcta
actgaaattaaagacgtgctagcttcacgtggactttctctaggcatgcgcctagaaaat
tggccacctgcaagtttagctgaataa
DBGET
integrated database retrieval system
