Pseudoalteromonas nigrifaciens: PNIG_b0150
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Entry
PNIG_b0150 CDS
T05271
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
png
Pseudoalteromonas nigrifaciens
Pathway
png03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
png00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PNIG_b0150 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
png03019
]
PNIG_b0150 (recQ)
03400 DNA repair and recombination proteins [BR:
png03400
]
PNIG_b0150 (recQ)
Enzymes [BR:
png01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PNIG_b0150 (recQ)
Messenger RNA biogenesis [BR:
png03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PNIG_b0150 (recQ)
DNA repair and recombination proteins [BR:
png03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PNIG_b0150 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
TniB
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASM55792
UniProt:
A0AAC9UNA4
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All DBs
Position
II:144982..146931
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AA seq
649 aa
AA seq
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MTPSLIQSLEQHFGFNQFRGGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTALHLPHLT
LVVSPLLALMKDQISFLNSKGIYAASLDSSQDQMQSSTVMNDVRSGKIKVLMVSVERFKN
ERFREFINQIAVSMLVVDEAHCISEWGHNFRPDYLKLPRYREELNIPLVLLLTATATKKV
KRDMAERFAIAPECIVQTGFYRANLDLSVLSVKTADKNTELTEIVRAQTGPGIVYVTLQQ
SAEQVANMLSAQGLQAVAYHAGLEDTLRGQIQDDFMAGKINVVVATIAFGMGVDKSDIRF
VIHYDLPKSIENYSQEIGRAGRDGQPSQCFTLANLDGLNTVENFVYGDTPELSGIEHVIN
DIRQHQSDHSKESQQWEMQEYSLSSDSNIRQLALKTLLVQLEMQGAITPLYAYYADFKYK
FLVDKAALLGHFDADRQAFLQLIFSHTQFKKIWGTLNFDTLTQAAQVDRKRVVAALDYLA
EKNLIALETKRITQVYQVHNEVINNPELAKQLHSYFVDKEQAEIKRIAALIRFFELKTCL
SYNLARYFDDHQAPQQCGHCSVCRGQAVTLEYSLAHSFANDAVIYQKVDELLSHLASKGI
HNIGIETQCRFLAGMSVPLFARNKVRQLSGFGLCEQQRYSEIKTKLLAR
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgaccccttcattaattcaatcacttgagcaacactttggctttaatcagtttagaggc
gggcagcagcaaaccatagagcagctgttaaatgggcaatcgtcgttggctatatttccc
accggctcgggtaagtctttgtgttatcaattaaccgcgttgcatttaccacatttaacc
ttagtggtgtcgccattattggcattgatgaaagatcaaattagctttttaaacagcaaa
ggtatttatgctgccagccttgattcgagccaagaccaaatgcaaagcagcacagtaatg
aacgatgttcgcagcggtaaaattaaagtcttaatggtgtcggttgagcgctttaaaaat
gagcgttttagagagtttattaaccaaatagcagtgtctatgttggttgttgacgaagcg
cactgtatttctgagtggggacacaactttagacccgactacttaaaactaccacgctac
cgtgaagagcttaatattccgctggtattattattaaccgccaccgcgactaaaaaagta
aagcgcgatatggccgagcgctttgccattgccccagaatgcattgtacaaaccggtttt
taccgcgctaatttagacttaagtgtgctgagtgtaaaaacggcggataaaaatactgag
cttactgaaattgtccgtgcgcaaaccggccccggtattgtgtatgtcacgctgcagcaa
agtgctgagcaagtggccaatatgttaagcgcacagggcctgcaagcggtggcgtatcat
gcagggcttgaagacaccctacgcgggcaaattcaagatgattttatggcaggaaaaata
aatgtagtggtcgccactattgcctttggcatgggggttgataaatcagatatccgtttt
gttattcattatgatttaccaaagtcgattgaaaactacagccaagaaattggtcgtgca
gggagagacggacaaccatcgcagtgttttacattggccaatttagatggcttaaacacg
gttgaaaactttgtttatggcgataccccagagcttagcggtattgagcatgtgatcaac
gatattcgccaacaccaaagcgatcactcaaaagaaagtcagcaatgggaaatgcaagaa
tacagcctttcaagtgatagtaatattcgccaattagcgcttaaaaccttgttagtacaa
ttggaaatgcaaggtgcaataacaccactttatgcttattacgccgactttaaatataag
tttttggttgataaagccgctttacttggtcactttgatgctgatagacaagcattttta
cagttaatatttagccatacccaatttaaaaaaatctggggcacactaaattttgacacg
cttacccaagccgctcaggtggatcgcaaacgcgttgttgcagcgcttgattatttagca
gagaagaatttaatagcacttgaaacaaagcgaatcacccaagtctatcaagtacataat
gaggtaatcaataaccctgagctggctaagcaattacacagctattttgttgataaagag
caagctgaaattaagcgtattgcggcacttattcgctttttcgagcttaaaacatgtttg
agctataaccttgctcgttattttgacgaccatcaagcgccacagcaatgcggccattgc
tcagtatgtagaggccaagctgtaacacttgaatattcactcgctcatagctttgctaac
gatgctgtaatttatcaaaaggttgatgagttacttagtcacctcgccagtaaaggtata
cataatataggtattgaaacccaatgccgctttttagcgggaatgagcgtaccgttattt
gcgcgtaacaaagtgcgtcaactcagtggttttggtttgtgtgagcagcagcgttacagt
gaaataaaaacgaaattactggcgcgttaa
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