Pseudalkalibacillus nanhaiensis: V1497_00355
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Entry
V1497_00355 CDS
T11239
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pnh Pseudalkalibacillus nanhaiensis
Pathway
pnh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pnh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V1497_00355 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnh03400
]
V1497_00355 (mfd)
Enzymes [BR:
pnh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V1497_00355 (mfd)
DNA repair and recombination proteins [BR:
pnh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
V1497_00355 (mfd)
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GFIT
Other DBs
NCBI-ProteinID:
XNY64885
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Position
69790..73326
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AA seq
1178 aa
AA seq
DB search
MQGLLNYFCDNDDFHSLATGMSEGLREQLVSGLSGSARTLMMACLYQANGRAQLVVTHNL
FQAQKLYEDLAGILGEDTVHLYPVNELTSAEIAIASPELKSQRIDVLNRLTDRNTGGIVI
TPIAGLRRMIPPPTVWKSSHVVFERGTDIDLDRVKGQLIAMGYERSDMITAPGEFSIRGG
ILDVYPLTETKPLRIELFDTEVDSIRYFDVETQRSEDQLQEIKVGPSEEIILFPEHYQKA
AANLELALSRSLQKIKDDGVKDKLTENIGYDIEQLKQQQTFQGMYKYISKYYDSPGSLLD
YLPENPVVIMDEISRIQETSSQLEKEEAEWHTALLNQGETVTGLDLSHSYEDLVDREDLV
FLYLSLFLRHVPHTNPQNIINMSCKAMQNFHGQLNVLLTEVQRWHKSKDAVVFMAANAER
AKRLERVMEDYKIEASIVEGKTPLTPGKNHIMIGDLNGGFELPMKKLVVLTEDEVFTKKT
RKARKPQRVSNAERIKSYSELKVGDYVVHVNHGIGKYLGIETLEINGVHKDYLHLKYAGD
DKLYVPVEQIDQVQKFVGSEGKEPKVYKLGGSEWKKVKSRVQSSVQDIADDLIKLYAERE
ATKGYAFSEDAGLQQEFESAFPYQETEDQLRAIEEIKKDMEKERPMDRLLCGDVGYGKTE
VAIRAAFKAINDGKQVAFLVPTTILAQQHFETFQERFAEFPITIKTLSRFRTRKEQTETL
KGLKAGTVDIVVGTHRLLSKDIQFKDLGLLIIDEEQRFGVTHKEKIKQMKTNVDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEFSGAVAREAIERELSRGGQVYYLY
NKVESIERMAEQISQLVPDARVAYAHGQMRESELESVMIDFLDGNYDVLVSTTIIETGVD
IPNVNTLIVHDADKMGLSQLYQLRGRVGRSNRVAYSYFMYQRDKVLTEVAEKRLQAIKEF
TELGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGEKPKKKQV
ELELDLNVDAYIPSSYIEDEKQKIDMYKRFKGISSFDDVLDLHDEMIDRFGDYPEQVQNL
FAVARIKLYAAQEKIVKIEQLKNNQVQILTSKETTSHLDGSKLFDIVNKIGRHVNLGMEK
EQIKVLVNTRRLSDEQLLKTIEDVLEQFPNAKKETVQA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggtttacttaattatttttgtgataatgatgactttcattcgcttgcaaccggg
atgtctgaaggtcttcgagagcagcttgtgtcaggcttgtcaggttcagcacgaacgtta
atgatggcatgcttgtatcaggcgaatggtcgtgctcagcttgttgtcacccataacctt
ttccaggcacaaaagctttatgaagacctggctgggatattaggtgaagacactgtgcat
ttatatcctgttaacgaactgacatcagcagaaattgcgattgcgagtccagaactgaag
tcgcaaaggatcgatgttctgaatcggttaactgatcgcaatacgggtggcatcgtcatc
accccgattgcagggttaagaaggatgatcccgcctccaactgtttggaaatccagtcat
gttgtttttgaaagagggacggatatcgaccttgatcgggtgaagggtcaattgattgcg
atgggttatgagcggtctgatatgattacagctcctggggaattcagtattcgcggaggg
attctcgatgtatatccgcttactgaaaccaaaccattacgaattgaattgttcgacaca
gaagtggattccatccggtattttgatgttgagacacaacgatcagaggatcagcttcag
gagatcaaggtgggaccttccgaagaaatcatcctttttcctgaacattatcaaaaggcg
gctgccaatttagagttggctttatcccgttcgcttcaaaaaatcaaagatgatggagtc
aaagataaactgactgaaaatatcggttatgatatcgagcagttgaagcaacaacaaaca
ttccaagggatgtataagtacatttccaaatattatgacagccctggtagtttactagat
tatttacccgaaaatccggttgtcatcatggatgaaatcagtcgaatccaggaaacctct
tcacagcttgagaaagaagaggcggagtggcacactgccctgttgaaccagggggaaacg
gttactggattggatttatctcattcttacgaggacctcgtcgatcgtgaagatctcgtc
tttttgtatttgtcattatttttaagacatgtgccccatacaaaccctcaaaacatcatt
aatatgagctgtaaggccatgcagaatttccatggtcaattaaatgtgctcctgactgaa
gtccaaaggtggcacaaaagcaaggatgccgtcgtctttatggcagctaatgcggagcga
gccaagcgcctggagcgtgttatggaggattataaaatcgaagcatccattgttgaaggg
aaaacgccgcttactccaggaaagaaccatatcatgattggtgatttgaacggcggtttc
gagcttccgatgaagaaactcgtcgttttgactgaggacgaagtattcacaaagaaaaca
cgaaaagcccgtaaaccacaaagggtttccaatgccgagcgtatcaagagctattcagag
ttgaaggttggcgactatgtcgtccatgttaatcatggaatcgggaaatacctcgggatc
gagactttggagatcaatggtgtccataaagattaccttcacttaaaatatgcaggggat
gacaagctttatgtacctgtcgaacagattgaccaggtgcagaaattcgttggttctgaa
gggaaggaaccaaaagtttataaacttggcggaagtgaatggaagaaggtcaaaagcaga
gtccaatcttctgttcaagatatcgccgatgacctgatcaagctgtatgcagagcgtgaa
gccacaaagggatacgcattctccgaggatgccggacttcagcaggagttcgaaagtgct
ttcccatatcaagaaacagaggatcaattacgagcgatcgaggaaatcaaaaaagacatg
gaaaaagaacgaccaatggatcgattattatgtggggatgtcggttacggaaaaacagaa
gtggcaatccgtgcagcattcaaagccatcaatgatggaaaacaggtggcgttcctcgtt
ccgaccacgatccttgctcaacagcactttgagacgttccaggaacgtttcgcagaattc
ccgattacgatcaagacactaagcagattcagaacacgtaaggaacagacggaaacattg
aagggtctgaaagctgggacagtcgatatcgttgtcgggacacacaggcttttgtcaaag
gacattcaattcaaggacctaggcctattgattatcgatgaagagcaacgtttcggggtc
actcataaagagaagatcaaacagatgaaaacgaatgtcgatgtcctcaccttgaccgct
actccaataccgagaaccttgcatatgtcgatgctcggagtccgggacctttccgttatc
gagacaccgccggagaatcgtttcccggtgcaaacctatgtggtcgagttcagcggggcg
gttgctcgtgaagcgatagagcgtgaattatcgaggggtgggcaagtctattacctctat
aataaagtggaatcgattgaacgaatggctgaacagatctcccagctcgtccctgatgct
cgtgtcgcttacgctcatggacagatgagggaaagtgagctggagtcggtcatgatcgat
ttcttggatgggaactatgatgtactggtcagcacgacgatcattgaaacaggtgttgat
atcccgaacgtcaacacgcttatcgtacatgatgcagacaagatgggactatcccagctg
taccagctccgtggacgagtcggacggtcgaaccgcgtcgcatattcttatttcatgtat
caacgtgataaggtgttaacagaggtagcggaaaaacgccttcaagccataaaagaattc
acggaattgggatccgggttcaaaatcgcgatgcgggatctatccatccgtggagcaggg
aatctgctaggagctcagcagcatggtttcatcgactcagttggatttgatttgtattct
caaatgttgaaagaggcgattgaagaacgtaaaggtgaaaagcctaagaagaagcaggtt
gagcttgagctcgatctgaatgtggatgcttacattccttcatcttatatagaagatgag
aagcagaaaatcgatatgtacaaacgctttaaagggatctctagctttgatgatgtcttg
gatcttcatgatgaaatgatcgatcgatttggagattatccagaacaggttcagaatctt
ttcgctgttgccagaatcaagctgtatgctgcacaagagaaaatcgttaagattgagcag
ctgaagaataatcaagtccaaattctgacttcgaaggaaacgacgtcccatctagatggc
agtaagctgttcgacatcgtcaacaaaatcgggagacatgtaaacctaggtatggaaaag
gaacaaataaaagtattggtcaatacacgaaggttgagtgacgagcagctcttaaaaacg
attgaagacgtgcttgaacaattcccaaatgccaagaaagaaaccgttcaagcctga
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