Pseudalkalibacillus nanhaiensis: V1497_00905
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Entry
V1497_00905 CDS
T11239
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pnh Pseudalkalibacillus nanhaiensis
Pathway
pnh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pnh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
V1497_00905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnh03021
]
V1497_00905
03400 DNA repair and recombination proteins [BR:
pnh03400
]
V1497_00905
Enzymes [BR:
pnh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
V1497_00905
Transcription machinery [BR:
pnh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
V1497_00905
DNA repair and recombination proteins [BR:
pnh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
V1497_00905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
DUF961
HHH_5
SAM_EPH
NMT1_2
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
XNY63319
LinkDB
All DBs
Position
161830..162774
Genome browser
AA seq
314 aa
AA seq
DB search
MIEIEKPRIETVELSDDATYGKFVVEPLERGYGITLGNSLRRILLSSLPGAAVTSVQING
VLHEFSTIDGVVEDVTTVILSLKKLALKIYSEEEKTLEIDVQGPGTVTAADITHDSDVEV
LNPDLHIATLSEDAHLQMKITAVRGRGYVPAEGNKSEEQAIGVIPIDSIFTPVSRVNYQV
ENTRIGQVTNYDKLTLDVWTDGSIRPEEAVSLGAKIVTEHLNIFVGLTDQAQKAEIMVEK
EEDQKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELTQKSEEDMMKVRNLGKKSLEEVQ
EKLEELGLGLRNEE
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgattgaaatcgaaaagccaaggattgaaacggtagagctcagtgacgatgcaacgtat
gggaaatttgttgttgaacctctcgagcgtggatacgggatcacgttgggcaactcgtta
cgccgtattcttttgtcttccctaccaggggcagcagtaacctccgtacaaatcaacgga
gtattgcatgaattctcaacgattgatggtgtcgtcgaagacgttacaactgtcatcctg
agccttaagaagcttgcgttgaaaatctactctgaagaagagaagacccttgaaattgat
gttcaaggaccaggaaccgttactgcagcagatattacgcatgatagtgatgtagaagtg
ttgaaccctgatcttcatatcgctactctttctgaggacgcacatcttcagatgaaaatc
actgctgtacgtggacgtggctatgtacctgctgaaggaaataagagtgaagaacaagct
atcggagtcattccgatcgactcgatctttacacctgtttcccgcgtgaactatcaggtt
gagaatacccgtatcggccaagtcacaaactatgacaaactaaccctcgatgtttggaca
gatggtagtattcgacctgaagaagctgtttcgcttggagctaagatcgttactgaacat
ttgaatattttcgtaggattgacagatcaagcgcaaaaagcagaaatcatggttgaaaaa
gaagaagaccagaaggaaaaagttctcgagatgacgattgaggaactcgatctttccgta
cgctcttacaactgtctaaagcgtgctggcatcaacacggttcaagagcttacacagaag
tctgaagaagacatgatgaaagttcgaaacctcggtaagaagtcattggaagaagtccag
gagaagttagaagagcttggacttggtttgcgtaacgaagaataa
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