KEGG   Pseudalkalibacillus nanhaiensis: V1497_01345
Entry
V1497_01345       CDS       T11239                                 
Name
(GenBank) helix-turn-helix domain-containing protein
  KO
K20480  HTH-type transcriptional regulator, quorum sensing regulator NprR
Organism
pnh  Pseudalkalibacillus nanhaiensis
Pathway
pnh02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:pnh00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    V1497_01345
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pnh03000]
    V1497_01345
Transcription factors [BR:pnh03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    V1497_01345
SSDB
Motif
Pfam: TPR_12 HTH_3 TPR_1 TPR_2 HTH_31 TPR_8 HTH_19 TPR_MalT SUCH1_C RPN7 RapH_N CFAP70_TPR_C ARM_TT21_5th TPR_CcmH_CycH ARM_TT21_C HTH_26 Latarcin DUF4807 SHNi-TPR
Other DBs
NCBI-ProteinID: XNY63390
LinkDB
Position
complement(237638..238903)
AA seq 421 aa
MIGQRIRYYRKTNGLTQEELARGICSVSYLSKIENGDAKSSEDVIELLCERLGISPKDKQ
IDVNIIGMLNEWNHLMVERKHDEVTVMKEKIDDYLPIIEDPQLLIRYDLFLARYYITHKK
IEEANEIIKKLDQLDKTHFDGPLKFYYNLIKGLYNYIINEYNESLKYFEEAEHFVQYTPL
TQLELATYYYSLALTHTALYHNTSVINYAYKSLTIFDKEYNYTRSADCQILLGIVNRRIN
NYSQAVHHFKQALKFAESFNDKRTLGIIYHNLGLVFSNKKESEKAIECYLKSTSIKEGSE
DKTIFITYYLLAMEFFNLNKFEESRSWLEKMDKHLETIQQLRQKDNLIHYNVLKMRLNNA
TGKEYESFLKKEVIPYFQDKNIMEFVCKYATLLAEYYYENSQYKNSSEYYKLALQAGSNF
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
ttgataggacagcgaataagatattacagaaagacaaatggcctcactcaagaagaatta
gccaggggaatttgctcggtttcctaccttagtaaaattgaaaacggagacgcgaaatct
agtgaagatgtgatcgaactactttgtgaacgcctcgggatttctccgaaggataaacaa
atagatgtgaatatcatagggatgctcaatgaatggaatcatctgatggttgaaagaaaa
catgatgaagtaaccgttatgaaagaaaaaatagatgattatctaccgattattgaagat
ccccaattgttaattcggtacgatttgtttttggcccgatattatataacccacaagaag
attgaagaggcaaacgagattattaagaagctcgatcaactcgataaaacacattttgat
ggccccttaaaattttattataaccttataaaaggcttatataactatataatcaacgag
tacaatgaatcattaaaatactttgaggaagccgaacattttgtgcaatatacaccatta
acccaactagagcttgcaacctattattacagccttgcattaactcatacagctctttat
cacaatacatcagtaattaactatgcttataaatcccttacaatattcgataaagagtac
aattatacgagaagtgcggactgtcagatattactagggattgtaaatagaagaattaac
aactactcacaagcggttcaccacttcaaacaagctctgaaatttgcagagtcatttaat
gataagcgcacactgggtatcatttatcataacttagggttagttttctcaaacaaaaaa
gaatctgaaaaagcgatagagtgttacttgaaaagcacctctatcaaagaaggttcagaa
gataaaacgatttttattacctattatttgttagccatggagtttttcaatttaaacaaa
tttgaagagtcgagatcctggttggaaaaaatggataaacaccttgagaccatccaacaa
cttagacaaaaggacaatttaattcattataatgttctaaaaatgcgacttaacaatgca
acaggaaaggaatatgagtcttttcttaaaaaggaggtcataccatatttccaagataag
aatatcatggagtttgtttgtaagtacgctacattattagccgagtattattatgaaaac
tcacaatataagaattcaagtgaatattataagctggctttacaagccggaagtaatttc
agttaa

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