Pseudalkalibacillus nanhaiensis: V1497_09070
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Entry
V1497_09070 CDS
T11239
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pnh Pseudalkalibacillus nanhaiensis
Pathway
pnh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V1497_09070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnh03019
]
V1497_09070
03009 Ribosome biogenesis [BR:
pnh03009
]
V1497_09070
Enzymes [BR:
pnh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V1497_09070
Messenger RNA biogenesis [BR:
pnh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V1497_09070
Ribosome biogenesis [BR:
pnh03009
]
Prokaryotic type
rRNA helicases
V1497_09070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
AAA_19
adh_short
Motif
Other DBs
NCBI-ProteinID:
XNY64822
LinkDB
All DBs
Position
1754186..1755679
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AA seq
497 aa
AA seq
DB search
MTTFKDLGIEARTLKAINDMGFEEPTPIQRDAIPVALKGKDLIGQAQTGTGKTAAFGIPM
IEKIDKDQTGVQALIVTPTRELAIQVAEELNKIGHHKRIRTLPIYGGQHIGLQIKALKKR
PQILVGTPGRLLDHLNRKTIRLGELKTVILDEADEMLNMGFIDDIKAILGQIPEEHQTML
FSATMPKAIQSLANQFMKEDREIIRVKASEMTVTKIDQRYVKVHEKEKFDVLCRLLDIQA
PELAIIFGRTKKRVDEVTDALNKRGYSADGIHGDLSQQKRDRVMKKFRTGRVDILVATDV
AARGIDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGIAITFMTSREFDHLKTIEQIT
KKRMEQMTIPTTDDALEGQQRMAADQLTNSIKNEDLESYYSVADELLAQYNPRDLVAAAL
KGYTKEPDKTPVDITPIKPLDSKKKSNKGGGGRPFNKNNKGKGGRPPKRGGGNRPQNNRS
GGSRQNRSHRSYKQRVK
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
ttgacaacatttaaagatttaggaattgaagcacgtacattgaaagcaattaatgacatg
ggattcgaagaaccaaccccgatccaaagagatgcgattccagtcgcgcttaaaggaaaa
gacttgattggtcaagcgcagaccggaacagggaagactgcagcattcggaattccgatg
atcgaaaaaatcgacaaggatcaaacaggtgttcaagcgttgattgtaacaccgacgcgt
gagttggcgatccaggtcgcagaagaattgaacaagatcgggcatcacaaacgcatccgc
acattgccgatctatggcggacagcatattggattgcagatcaaagcattgaaaaaacgt
ccgcaaatcctcgttggtacaccaggacgtttattggatcacttgaatcgaaaaacgatt
cgattaggtgaattgaaaaccgtcattctagacgaagcggatgaaatgttgaacatggga
ttcattgacgacatcaaagcgattcttggtcaaatccctgaagaacaccaaacgatgctg
ttctcagcaacaatgccaaaagcaattcaatcccttgcgaaccagttcatgaaggaagac
cgggaaattatccgcgtaaaagcgagtgagatgaccgttacgaaaatcgaccagcggtat
gtgaaagttcatgaaaaggaaaagttcgatgtcctatgccgattactcgatattcaggca
ccagaacttgccatcattttcggccgtacgaagaaacgtgtagacgaagtgacggatgca
ttgaacaaacgtggttattcagcagacggaatccatggcgatctctcgcagcaaaaacgt
gaccgcgttatgaagaagttccgtactggccgggtggacatcctcgttgcaacagatgtt
gctgctcgtggaattgatatcagtggtgttacacacgtatacaacttcgatattcctcaa
gatccagaaagctatgtacaccggatcggacgtacaggtcgtgctggaaaaacaggaatt
gccattacgttcatgacatcccgtgaattcgatcacttgaagacaattgaacaaatcacg
aagaaaagaatggaacagatgacgattccgacgacggatgatgcattggaaggtcaacag
cgtatggctgcggaccaattgacgaattccatcaaaaatgaagatctggagtcttattat
agtgtcgcagatgagttgcttgcacaatacaacccacgcgacttggttgcagcagcgctt
aaaggatatacgaaagaaccggataagacaccagttgatattacaccaatcaaaccattg
gattccaagaaaaaatccaacaaaggtggcggcggtcgaccattcaacaaaaacaataaa
gggaaaggtggacgtcctccaaagcgtggaggcggcaaccgacctcaaaacaaccgttct
ggtggaagtcgacaaaaccgttctcaccgttcttacaagcaacgggtgaaataa
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