Prevotella nigrescens: J5A59_04665
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Entry
J5A59_04665 CDS
T07424
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pni
Prevotella nigrescens
Brite
KEGG Orthology (KO) [BR:
pni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pni03032
]
J5A59_04665 (topA)
03400 DNA repair and recombination proteins [BR:
pni03400
]
J5A59_04665 (topA)
Enzymes [BR:
pni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
J5A59_04665 (topA)
DNA replication proteins [BR:
pni03032
]
Prokaryotic type
DNA Topoisomerases
J5A59_04665 (topA)
DNA repair and recombination proteins [BR:
pni03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
J5A59_04665 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
SBP_bac_3
Viral_P18
Motif
Other DBs
NCBI-ProteinID:
QUB52388
LinkDB
All DBs
Position
1:complement(452833..455178)
Genome browser
AA seq
781 aa
AA seq
DB search
MQENLVIVESPAKAKTIEKFLGEDFKVMSSYGHIRDLKKKELSVDLDTLEANYEIPEEKK
KVVSELKKNAKAAKKVWLASDEDREGEAISWHLCEVLGLDEAKTSRIVFHEITKPAILAA
IQNPRHLDMNLVNAQQARRVLDRLVGFRLSPVLWRKVKPALSAGRVQSVAVRLIVERERE
IQAFKSEPYYRISAIFAATSEDGTKNEVKAELNKRFSTHEEALAFLEQCKTASFKISSIA
RKPLKRTPAPPFTTSTLQQEAARKLGFTVSQTMMVAQRLYEAGRITYMRTDSVNLSSLAI
STTQKEIERLYGTEYSQTRKYHTSSKGAQEAHEAIRPTDMSAHNIDGTSQEKRLYDLIWK
RTAASQMADAKIDKTTVSIAIFDTEGHEAADLQFVATGEVITFDGFLKVYRESTDDENEN
EDTSHALPAMNEGQLLERRSIVSTERYSMGPSRYTEASLVHKLEELGIGRPSTYAPTIST
IQQREYVQKGEKKGEERTYTVDTLQALKITSKNKKEMAGADKGKLIPTDIGIVVNDFLME
NFPDIMDYNFTAKVEQEFDKISEGKAKWNTAMKDFYKHFEPEVESVMNARSEHKAGEREL
GVDPKTNKPVFVKIGRFGPVVQIGTADDTDKPRFAQIPTDKSMETLTLDDALELFKLPRT
VGQFEGTDVVIGAGRFGPYIMHNKKYVSLPKEEDPLTVSLDTAIRLIETKRLQDAQRHLK
QFDEDPKLEVMNGRYGPYIAYDGKNYRIPKAMHERAAELTYEECQDIMKNAPEPKTRRKR
K
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaaacttagttatagtggaaagccctgcaaaggcgaagacaatagagaagttc
ttaggcgaagactttaaagtaatgtcgtcgtacggacatattcgtgatttgaaaaagaaa
gagctgagtgtggatttggacactttagaagccaattacgaaattccggaagagaagaag
aaggttgtttcagaacttaaaaagaacgcaaaagccgccaaaaaggtttggttggcatcc
gatgaagaccgcgaaggagaagccataagctggcacctttgcgaagttttaggtctcgac
gaagcaaaaacaagtcgcattgtgttccacgaaattacgaaaccagccattcttgccgcc
attcagaatccccgtcatttggacatgaaccttgtaaacgcacagcaagcacgccgtgtc
ttggaccgtttggtaggtttccgcctgtctccggtgttgtggcgcaaagtaaaaccggca
ctaagcgcagggcgcgtgcaaagcgttgccgtacggttgatagtagaacgcgagcgcgaa
atacaagcgtttaagtctgagccctattacagaataagcgcaatattcgctgcaacaagc
gaagacggcacgaaaaacgaggtgaaggcagaactaaacaagcgtttttctacgcacgaa
gaggcgttggcgtttcttgaacagtgcaaaacggcatcgttcaaaatatcttccatcgcc
aggaaaccgctgaaacgtacccccgcccctccctttacaacatctacattgcaacaggaa
gctgcacgcaaactcggcttcacagtaagtcagaccatgatggtggcacagcggttgtac
gaagcaggacgcattacatacatgcgtaccgacagcgtaaacctctcgtcgctcgccatc
agcacgacccaaaaagagatagagcgcttatatggcaccgaatatagtcagactcggaaa
tatcacaccagcagcaagggggcacaagaagcccacgaggctatccgtccaaccgacatg
agtgcacacaacatagacggaaccagtcaggaaaaacgtctttacgaccttatctggaag
cgcacggcagcatcgcaaatggcagacgccaagatagacaagaccactgtctctattgcc
atcttcgatacggaagggcatgaagcagccgacttgcaattcgtagccacgggagaagta
attacattcgacggctttctgaaagtttatcgcgagtctactgacgacgaaaacgagaac
gaagacacgtcgcacgcactgccggcaatgaacgaaggtcagcttctggaacggcgcagc
atagtttccaccgagcgctattccatgggaccaagtcgctacacagaagcaagtcttgtg
cataagctcgaagaactgggcattggccgcccatcaacatacgctccaaccatctcgacc
attcagcaacgcgagtacgttcagaagggagaaaagaagggagaagaacgtacatacacc
gtagacacattacaggcactgaagattacttcgaagaacaagaaggaaatggcaggtgcc
gataagggaaaacttattccaaccgacattggcatcgtggtaaacgacttcctcatggag
aacttcccagacattatggactacaatttcacagcaaaagtagaacaagagttcgataaa
atctcggagggaaaggcaaaatggaacactgcaatgaaagatttctataagcatttcgaa
cccgaagtggaatccgtaatgaatgcacggtcggagcataaggctggtgaacgcgagtta
ggagtagaccctaagaccaacaaacccgtatttgtaaagattggacgcttcggtcctgtc
gtgcaaatcggcactgccgatgatacggacaagccccgctttgcgcaaattccgaccgac
aagagcatggagacactcacgctcgacgatgcattggaactgtttaagctgccacgcacg
gtcggacagtttgaaggaaccgacgtcgtgattggcgcaggacgtttcggtccatacata
atgcacaacaaaaagtatgtctcattgcccaaagaggaagatcctttgacagtttcgctt
gacacagccatacgcctgatagaaacaaaacggctccaagatgcacaaagacaccttaaa
cagttcgacgaagacccgaagctggaagtaatgaacggtcgttacggtccatacattgca
tacgacggaaagaactatcgcataccaaaagccatgcacgaaagggctgccgaacttacg
tatgaagagtgtcaagacattatgaagaatgctcctgaaccgaaaacaaggcgcaaacgc
aaataa
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