Prevotella nigrescens: J5A59_06445
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Entry
J5A59_06445 CDS
T07424
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pni
Prevotella nigrescens
Pathway
pni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5A59_06445 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pni03019
]
J5A59_06445 (recQ)
03400 DNA repair and recombination proteins [BR:
pni03400
]
J5A59_06445 (recQ)
Enzymes [BR:
pni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J5A59_06445 (recQ)
Messenger RNA biogenesis [BR:
pni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J5A59_06445 (recQ)
DNA repair and recombination proteins [BR:
pni03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J5A59_06445 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
QUB52710
LinkDB
All DBs
Position
1:929391..931574
Genome browser
AA seq
727 aa
AA seq
DB search
MAKEVNLTEKLKHFFGFDKFKGAQEAIIRNVLAGNDTFVLMPTGGGKSLCYQLPSLIMEG
TAIVISPLIALMKNQVDVINGISEEDGVAHYLNSSLKKTEIDNVKADIQNGKTKLLYVAP
ESLNKEESIEFFKTVKVSFYAIDEAHCISEWGHDFRPEYRKIRQAIDQIGKAPIIALTAT
ATDKVRTDIVKSLGIEDCAEFKSSFNRPNLYYEVRPKKNEEDTNRQIIKFIKQNLGKSGI
IYCLSRKKVEELAAVLQANDIKAAPYHAGLDSETRSKTQDDFLMENIDVIVATIAFGMGI
DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGKCIVFYSKNDLKKLENFMEGKPVAEQ
DIGRQLLQETETYAESSVCRRKLLLHYFGEEYTKDNCGMCDNCLHPKEKIEAKQPLLIVL
QAVKALGGNFRQEYVIDFVKGRGTDDIKDHKHNLLEEFGLGEKENPKIWNPVIRQAMLEG
YLKKDVENYGLLKLTAAGKQFLKEPKSFMIVMDKEFKTDEIDESMVGGTSVADPELYAML
KDLRKHLARKLGIPAYVIFQDPSLDQMAMMYPITEEELQNIQGVGVGKAKRYGKEFCELI
KKYCKEKNIERPEELRVRTVAKKSMQKVKIIQDIDRKLPLDDIAVAEGLSFDELLSKIEE
IVYSGTKLNIDYFLRDIYDEDKIEDIYDYFMNSHTDNIDEALKELDDDYTEDDIRLIRIK
FISEMAN
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagaagtcaatctcacagaaaagctaaagcactttttcggctttgataagttc
aagggcgcacaagaggctattatccgcaacgtattagctggcaacgacactttcgtgctg
atgcctacgggtggcggcaagagcctttgctaccaattgccttcactcataatggaaggc
acggctatcgttatttcccctctgatagcattgatgaaaaatcaagtagatgtcattaat
ggtatcagcgaagaagatggcgtggcgcattatctaaactcatcgttgaagaaaacagag
attgacaacgttaaagccgacattcagaacggcaagacaaagttgctttacgttgcacca
gagtcgctaaacaaagaggaaagcatagaattcttcaagacagtaaaggtcagtttctat
gcgatagacgaggcgcactgtatctcggagtggggacacgacttccgaccggagtatagg
aagatacgacaagctatagaccagattggcaaagcaccgataatagccctcactgccaca
gctaccgacaaggtacgcacagatatcgtgaagagtttgggcattgaagactgtgccgaa
ttcaagagttcgttcaatcgtcctaacctttactacgaggtacggcccaagaagaacgag
gaagacaccaaccgtcagattatcaaattcatcaagcaaaatctcggaaagagcggtatc
atctactgcctttcacgcaagaaggttgaggaactggctgccgtgttgcaagccaacgac
ataaaggcagcaccataccatgccggtctcgactcggaaacgcgttcgaagacgcaagac
gacttcctgatggaaaacatcgacgtcattgttgcaaccattgccttcggcatgggcatc
gacaaacccgatgtccggttcgttatccactacgatattccaaagagtctggaaggctat
taccaggaaacagggcgtgcgggacgcgacggagaagaaggcaaatgtattgtattctac
tcgaaaaacgacctcaagaaactcgaaaactttatggaaggcaagcccgttgccgaacaa
gacataggcagacagctgctgcaagagaccgaaacatacgccgaatcgtcggtttgccgc
cgcaaactgctgctccactactttggcgaagaatatacgaaagacaattgcggtatgtgc
gacaactgtctgcacccgaaagagaagattgaagcaaagcaaccgctattgattgtattg
caagcagtgaaggctttaggcggaaatttccgccaagaatatgtcatagactttgtcaag
gggcgtggtactgacgatataaaagaccataaacacaatttgctcgaagaatttggactc
ggtgaaaaggaaaatccgaagatatggaaccccgttattcggcaagccatgttggaaggc
tatttaaagaaagatgtagaaaactatggtctactgaaactcaccgcagctggaaaacaa
ttcttgaaagaaccgaagtcgtttatgattgtaatggacaaagagttcaaaactgatgaa
atagacgaaagtatggtaggcggaacaagtgttgccgaccccgaactctatgctatgctg
aaagacctgcgcaagcatttggcacgcaagttaggcattccggcttacgttatcttccaa
gacccatcgttagaccaaatggctatgatgtatcccattacggaagaggaactgcaaaac
atacaaggcgtgggcgtgggcaaggcaaaacgttacggaaaggagttctgcgaactcata
aaaaaatactgcaaggaaaagaacatagagcgtcccgaagaactgcgcgtgcgcaccgtg
gctaagaaatcgatgcagaaagtgaagattattcaagatattgaccgcaaattgccgtta
gacgacattgccgttgccgaaggactcagcttcgacgaactgctttcaaagatagaagaa
atcgtgtatagtggcacaaagctcaacatagactacttcttgagggacatttacgatgaa
gacaagatagaagacatctacgattactttatgaacagccataccgacaacatcgacgag
gctctcaaggaactcgacgatgactataccgaagacgatattcggttgattcgcataaag
tttatatccgagatggcaaactaa
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