Prevotella nigrescens: J5A59_07200
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Entry
J5A59_07200 CDS
T07424
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pni
Prevotella nigrescens
Pathway
pni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5A59_07200 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pni03019
]
J5A59_07200 (rny)
Messenger RNA biogenesis [BR:
pni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J5A59_07200 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
Motif
Other DBs
NCBI-ProteinID:
QUB51131
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All DBs
Position
1:1121272..1122810
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AA seq
512 aa
AA seq
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MSLITIIIALGCLAVGCVIGYATFRYMINAQYKESMAKAERDTEVLKEKKLLEVKEKFLN
KKSELEKEVQQRNHKFQQNENRLKQKEITLNQRLDETNRRKQEIEQQQQRIENEKKLLLV
KEQELEKQKELERAKLEELSGLSAEEAKSRLVESLKDQAKLDAASYINEIVDEAKLNANQ
QAKKIVIQTIQRVATETAIENSVSVFHIESDEVKGRIIGREGRNIRALEAATGVEIVVDD
TPEAIVISGFDPVRREICRLALHQLVSDGRIHPARIEEIVAKVKKQLDNEIIETGKRTAI
DLGIHGLHPELIRIIGKMKYRSSYGQNLLQHARETANLCGIMASELGLNPKKAKRAGLLH
DIGKVPDEETELPHALYGARIAEKYKEKPEICNAIAAHHDEAEMTSLIAPIVQVCDAISG
ARPGARREIVEAYIKRLNDLEAIAMSYPGVTKTYAIQAGRELRVIVGADKMDDAQSEQLS
TEIAEKIQNEMTYPGQVKITVIRETRSVSYAK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaataacaataataatagccctcggctgtctcgcagtaggttgcgtcattggt
tatgctacattccgttacatgattaatgcacaatacaaagaatctatggcaaaagccgaa
agagatactgaggtgttgaaggagaaaaaactactcgaagttaaagaaaagtttcttaat
aagaaaagtgaattagaaaaagaagttcagcaacgaaaccacaaattccagcagaatgag
aaccgtttaaaacaaaaagaaattacgctaaatcaacggttagacgaaacaaatcgtcgc
aagcaggaaatagagcaacaacaacagcgtatagaaaatgaaaagaagttattgttggta
aaggaacaagaattagaaaaacagaaagagttagaacgtgcaaaactcgaagaactttct
ggattgagtgctgaagaagcaaaaagccgacttgttgaaagtttgaaagatcaggcaaaa
ctcgatgctgcatcatatatcaatgaaatcgttgacgaggctaagctgaatgctaatcaa
caagctaagaaaattgttattcagactattcaacgtgttgcaacagaaaccgcaatagaa
aattctgttagtgttttccacattgaaagcgatgaagtaaagggtagaattattggtcgc
gaaggtagaaacattcgtgcacttgaagcagccacaggtgtagaaatagttgtagacgat
acacccgaagcaattgttatttctggtttcgacccagttcgtcgtgaaatttgtcgtttg
gctcttcatcaattagtttctgatggacgtattcacccggcacgtatagaggaaattgtt
gctaaagtgaaaaaacaattagacaacgagataattgagaccggaaaacgcacggcaatc
gatttaggtatccacggtttgcacccagaacttattcgtattataggaaaaatgaaatac
cgctcatcatacggacaaaatcttttgcaacatgcaagagaaactgcaaatctttgtggt
attatggcaagcgaacttgggttaaatcctaagaaagcaaaacgtgcaggactgttgcac
gatataggaaaagtacccgacgaagaaacagaacttccacacgcattatacggtgctcgt
atcgcggagaaatataaagaaaaaccagaaatttgtaatgctatagctgcacaccacgac
gaggcagaaatgaccagtcttattgcacctattgtacaagtttgtgatgcaatttctggt
gctcgtccaggtgctcgtcgcgaaatagtagaagcttatataaaacgtttgaacgactta
gaggcaattgctatgagctatccaggcgtaacaaaaacttatgctatacaagctggtaga
gaactacgtgttattgtgggcgccgataagatggacgatgcacaaagcgaacaactaagt
acagagattgctgaaaaaattcagaacgaaatgacttatcctggacaagttaaaattacg
gttattcgcgagacacgtagtgtttcttatgcaaagtaa
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