Prevotella nigrescens: J5A59_10500
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Entry
J5A59_10500 CDS
T07424
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pni
Prevotella nigrescens
Pathway
pni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5A59_10500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pni03019
]
J5A59_10500
03009 Ribosome biogenesis [BR:
pni03009
]
J5A59_10500
Enzymes [BR:
pni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J5A59_10500
Messenger RNA biogenesis [BR:
pni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J5A59_10500
Ribosome biogenesis [BR:
pni03009
]
Prokaryotic type
rRNA helicases
J5A59_10500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
NadN_nucleosid_C
UvrA_inter
RnlB_antitoxin
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QUB51735
LinkDB
All DBs
Position
1:1865711..1867603
Genome browser
AA seq
630 aa
AA seq
DB search
MKTFEELGVSEEIRRAIEELGFEQPMPVQEAVIPYLLGNGNDVIALAQTGTGKTAAYGIP
VLQKVDPTQKETQALILSPTRELCLQIADDLSDFSKYIDGLHVAAVYGGASIEMQSRQLR
KGAQIIVATPGRLIDLMKRGVAKLDAVCNVVLDEADEMLNMGFSESINAIFEGVPSDRNT
LLFSATMSREIEKIAKSYLHDYKEIVVGSRNEGAEKVNHIYYMVHAKDKYLALKRIVDYY
PSIFAIIFCRTKVETQEIADKLIRDGYNAEALHGDLSQQQRDLTMQKFRQHNVQFLVATD
VAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHSRERHKVKAIEKT
IQKEFVDGTLPSAKEICSKQLYKVMDQILKVDVNEEEIEPFLKEINRHFEYVDKEDIIKK
IISMTFNRFLDYYANAPEIEKPSGKRGDRKSERGSRSSRGERNRKGPRTPEAGYKRLFIN
LGKDDGFYPGEVMQFINKNVHGRQAVGHIDLLGKFSYIEVPEKDAAKVMKALNGATYKKR
EVRCNDAEEGGHSRSNGERRSKRSNEETNKRRSNSTRQERGSKQKGNARTQQETGDTGDW
RQFFQHDTKLKGEIPDFSEEGWARRKPKKK
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacatttgaagaattaggcgtcagcgaagagattcgccgcgccattgaagagctc
ggttttgaacaaccgatgccagtccaggaagcagttatcccttatttgttgggtaatggt
aacgacgttatagcactcgcacagacgggtacaggcaagacggcagcatatggaatacca
gtcttgcagaaagtagacccaacgcagaaagaaacccaggcacttattctcagtccgaca
cgcgaactctgtttgcagattgccgacgacctttccgatttctcgaagtacattgatgga
cttcacgtcgcagcagtttacggtggtgcatctatcgaaatgcaaagtcgccagcttcgc
aagggagcacaaatcatcgtggctacccccggccgtcttatcgacctgatgaaacgcggt
gttgctaaattggacgctgtatgcaatgttgtgctcgacgaagctgacgaaatgctgaac
atgggcttctctgaaagcatcaatgccatattcgagggcgtcccgtcagaccgcaacacg
ttgttgttctctgctacaatgagccgggaaatagagaagatagccaaaagctatctgcac
gattacaaggaaattgtagtgggcagccgcaacgaaggagccgagaaagtgaaccatata
tattatatggtacacgcaaaagacaagtatctggcactgaaacgcatcgtagactattat
ccaagcatattcgccattatcttctgccgtacgaaggtggagacacaagagattgccgac
aagctcattcgtgacggatacaacgctgaagccttgcacggcgacctcagtcagcagcaa
cgcgacctgacaatgcagaagttccgccagcacaatgtgcaattcctcgtggctaccgac
gttgctgctcgtggactggacgtagacgatttgacccacgttatcaactacggattgccc
gacgacattgaaagctacacccaccgaagcggtcgtacaggtcgtgcaggcaagaagggt
acgtctatttcgattatccattcgcgcgaacgccacaaggtgaaggcaatcgagaaaacc
attcagaaggaatttgtagacggaacgctgccttctgcaaaggaaatttgcagtaaacaa
ctctacaaggtgatggaccaaattctgaaagtagacgtaaacgaagaggaaatagaacct
ttcctgaaggaaatcaaccgccatttcgaatacgtcgacaaagaagacattatcaagaaa
atcatcagtatgacctttaatcgcttcttggattactacgccaatgcacccgagatagag
aaaccatcgggcaaacgtggcgaccgaaaaagcgaacgcggcagccgcagcagtcgtgga
gagcgcaaccgaaaggggccacgcactcctgaagcaggttacaagcgtttgttcattaac
cttggaaaagacgacgggttctaccccggcgaagtcatgcagttcataaacaagaacgta
cacggtcgccaagcagtgggacacatcgatttgttgggcaagttctcttacatagaagtt
ccggagaaagacgctgccaaggtgatgaaagcccttaacggcgccacctacaagaagcgt
gaagtgcgttgcaacgatgccgaagaaggcggacacagccgcagcaacggcgaaagaaga
agcaagcgaagcaatgaagaaactaacaagcgtcgttctaatagcacccgccaagaacgt
ggaagcaagcaaaaaggcaacgcacgaacacagcaagaaacaggcgatactggcgattgg
cgacagttcttccagcacgataccaaattaaaaggtgagatacccgatttctcagaggaa
ggttgggcaagaagaaaaccaaagaagaagtaa
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integrated database retrieval system
