Paenibacillus nuruki: AASFL403_06110
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Entry
AASFL403_06110 CDS
T09651
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pnk
Paenibacillus nuruki
Pathway
pnk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pnk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AASFL403_06110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnk03400
]
AASFL403_06110
Enzymes [BR:
pnk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AASFL403_06110
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AASFL403_06110
DNA repair and recombination proteins [BR:
pnk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AASFL403_06110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
CAJ1314764
LinkDB
All DBs
Position
403:1351592..1352416
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AA seq
274 aa
AA seq
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MPELPELENYKVQLSNYILNVPITQIEVKRAKAVNLESEQVNRQIVGERIAFIERRGKYL
NLHTNNGQRLLLSIAAGGSLFYGKTKDNADRVSDVEIQFEDHNSLYFTGARQGMFYVYTA
KEAGAKLKDLGPEATDRKLTEEQFIKLYKGRRSSLKTALTNQNLVAGIGSYYADEIAFTA
GLLPSAKVQELEDEALSRLYVAMQTVLEEAIQTGGHLAGQPLTVTDSLTGGFHELRRVYE
REGEPSVRSAKDLIVKTEVSGKKAYYCPATQFEK
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattgccagaattagaaaactataaagtgcaattaagcaattacattttaaat
gtaccgattactcaaattgaggttaagcgtgccaaagctgttaatctcgaatccgaacaa
gtaaatcgtcaaatcgtaggcgaacgaattgcttttatcgaacgtcgcggcaaatattta
aatttgcataccaacaatggacaacgtctgcttttaagtattgcagcaggtggttcttta
ttttatggcaaaacaaaagacaatgcagatcgtgtatctgatgttgaaattcaattcgaa
gatcacaattctctttactttaccggtgcacgtcaagggatgttctatgtgtatactgcc
aaagaagcaggcgctaaattaaaagatttaggtcctgaagcaacggatcgcaaattaacg
gaagaacagttcatcaaattatataaaggtcgtcgcagttctcttaaaacggcattgacc
aatcaaaatctagtagcaggtattggaagctactacgcggatgagatcgcatttacagct
ggattattaccatctgccaaagtacaagaactagaagatgaagcattatctcgtctttat
gtcgctatgcagactgtactagaagaagcgattcaaacaggtggacatcttgcgggtcaa
ccgttaacagtaacggattcgttaacaggtggattccatgaacttcgtcgtgtatatgag
cgtgaaggtgaaccttctgtacgttctgccaaagacttaattgtcaaaaccgaagtctca
ggtaaaaaagcatattattgtccagctacacaatttgaaaaataa
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