Paenibacillus nuruki: AASFL403_13000
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Entry
AASFL403_13000 CDS
T09651
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pnk
Paenibacillus nuruki
Pathway
pnk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AASFL403_13000 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnk03019
]
AASFL403_13000 (recQ)
03400 DNA repair and recombination proteins [BR:
pnk03400
]
AASFL403_13000 (recQ)
Enzymes [BR:
pnk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AASFL403_13000 (recQ)
Messenger RNA biogenesis [BR:
pnk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AASFL403_13000 (recQ)
DNA repair and recombination proteins [BR:
pnk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AASFL403_13000 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
CAJ1316136
LinkDB
All DBs
Position
403:complement(2882086..2883969)
Genome browser
AA seq
627 aa
AA seq
DB search
MSVQAPVMQEAQTLLQKYFGYEDFREGQRKIVNSLLQRQDTLGIMPTGGGKSICYQIPAM
VNDGVTLVISPLISLMKDQVDALTAAGIPAAYINSTLTGKEVNERIRASRRGDLKLLYVA
PERLELDWFREEMNGVNITCIAVDEAHCVSQWGHDFRTSYLEISPFVNQLPQRPIVAAFT
ATATPEVRDDILRLLRLDDPQVFITGLGRDNLAMAVMRGTQRRDFVIDYAKSHDNESGII
YAATRKDVDDLYSRLLSSGVAAGRYHAGMSDDERDQSQEAFIYDDIRVIVATNAFGMGID
KSNVRYVIHYNMPKNMEAYIQEAGRAGRDGDPSECILLFSPQDIMTQKFLLEQNMHEGDR
KHNDYRKMQQMVDYCYTTKCLRNAMLDYFHEEHSGEPCGQCSSCRDARELVDMTIDAQKI
FSCIHRLRERFGVSVVAQVLKGSRNKKVLQYQFDQLPTHGLMSHLSEKEISERINVLAAE
GYLLLTEGQYPVVKLQPIAAEVLKGQRKVMQRAPRPMAGSASSSSSSSRSRTTSRNNDAS
AVNETIFEQLRLIRRELASREGVPSYIIFNDATLREMSVVEPQSEGEMLEIKGVGEVKFR
KYGEPFLAFFQKESLELDQGRYDMEEF
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgcaagcgcctgtgatgcaggaagcacagactttgttacagaagtattttgga
tatgaagactttagagaaggtcaacggaagatagtaaatagtctgttacaacgtcaagat
acccttggaattatgccaacaggtggcggtaagtcgatctgttatcagattccagcgatg
gtcaatgatggagtaacactggtgatctcaccgctgatctcattaatgaaagatcaggtc
gatgcgctgacagcagcagggattcctgcggcttatattaatagtacgttaacaggtaaa
gaagtgaatgaacggattcgtgcttcacgtcgcggagacctgaagttactatatgtagca
cctgagcgattagaactggattggttccgtgaagaaatgaacggtgtcaatattacatgt
atcgctgttgatgaagcacactgtgtatctcagtggggtcatgattttcgtaccagttat
cttgaaatttcaccgtttgtgaatcaattgccacagcgtcccatcgttgctgcttttaca
gcaacagctacaccggaagtgcgtgacgatattttgcgtttattgagattagatgatccg
caagtttttatcacagggctgggtcgagataatctagcaatggcggttatgcgtggtaca
cagcgtcgtgattttgtcattgattatgccaagtctcatgataatgaatccggtattatt
tatgcagctactcgtaaagatgtagatgatctgtacagtcgtctgcttagtagtggtgta
gcagctggacgttatcatgcaggaatgagcgacgatgaacgggatcagagtcaggaagct
tttatttatgatgatattcgtgtgatcgtagctacgaatgcattcgggatgggtattgat
aagtctaacgttcggtatgttattcattataatatgcccaaaaatatggaagcttatatt
caagaagccggtcgtgccggtcgtgatggcgatcctagtgaatgtattttgctatttagt
ccgcaagatatcatgacacagaaatttctactcgaacaaaatatgcatgaaggagatcgc
aagcataacgattatcgcaaaatgcaacagatggtggattactgttatacgaccaaatgt
ctgcgtaatgcgatgcttgattactttcatgaagaacattccggtgaaccttgcggacaa
tgtagttcttgccgtgatgcgcgcgagttagtcgatatgacgatagatgcgcagaaaata
ttttcgtgtattcatcgtttacgtgagcgattcggtgtatctgtggttgcgcaagtcctt
aaaggttcacgcaataaaaaagtactgcaataccagttcgatcaattgcccacccatgga
ttaatgtcccatttgtcggaaaaagaaatctcagaacgtatcaatgtactggcggcagaa
gggtatctactcctaacagaaggacaatatccagtggtgaaattacaaccgatcgcagcc
gaagttcttaaaggacagcgtaaagtgatgcaacgtgcgccacgtccaatggcgggttct
gcttctagcagttcaagttctagccgtagccgtacaacaagccgtaataatgatgcttca
gcagtgaatgagacgatcttcgagcaattgcgcctgattcgccgtgaactggcatcacgc
gaaggtgtaccatcttatatcattttcaatgatgctactttacgtgaaatgagtgtcgtc
gaaccacaaagcgaaggcgaaatgctggagattaaaggtgtcggtgaagtgaaattccgt
aagtatggtgaaccattccttgcttttttccagaaggaaagtttggaactggatcaaggg
cgttacgatatggaagaattctaa
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