Paenibacillus nuruki: AASFL403_18135
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Entry
AASFL403_18135 CDS
T09651
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pnk
Paenibacillus nuruki
Pathway
pnk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AASFL403_18135 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnk03019
]
AASFL403_18135 (rnr)
03016 Transfer RNA biogenesis [BR:
pnk03016
]
AASFL403_18135 (rnr)
Enzymes [BR:
pnk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AASFL403_18135 (rnr)
Messenger RNA biogenesis [BR:
pnk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AASFL403_18135 (rnr)
Transfer RNA biogenesis [BR:
pnk03016
]
Prokaryotic type
tRNA degradation factors
AASFL403_18135 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
OB_RNR_1st
OB_Dis3
S1_RRP5
CSD
Motif
Other DBs
NCBI-ProteinID:
CAJ1317145
LinkDB
All DBs
Position
403:complement(4070813..4073581)
Genome browser
AA seq
922 aa
AA seq
DB search
MITEQQVLDVIKSIDYKPMTYQELEQQLEIQAASDFKELVKILNELERTGIIVQNKSHHY
GLPEHMDLVRGRIQAHAKGFAFLIPEEKEHGDVYINANDMGTAMNGDIVFVKVTSRSTTG
GRMEGEVIRVITRKNTRVVGVFQGLDTYGFIIPDDKRINRDIFVPKEAFGGAVEGEKVVA
EIVSYPEGRAAAEGRIVEVLGHKDDPGVDILSVIRKHQLPESFPDEIMDEAQAAPDSITD
AEIVEQGRRDLRDKNIVTIDGEDAKDLDDAVNVERLDNGHYRLGVHIADVGYYVKEGSKL
DIEAYNRGCSVYLVDRVIPMLPHRLSNGICSLHPQVDRLTLSCEMEFDEHMKVVKHEVFT
SVIKTKERMTYTNVRKILEDEDPELLERYAPLVEDFKLMRELAMQLREMRARRGAVDFDF
DEAKIILDEKGRPIDIVKRERSVAEQIIEEFMLAANETVAEHFSTLQVPFLYRIHENPDQ
EKLQNFLAFASNFGHVIKGTGDHVHPRALQQLLQDIKGEKEETVISTMMLRSMKQAKYSA
DSSGHFGLAADYYSHFTSPIRRYPDLVIHRVIREVIENGGKLKPKRQDYLNSRMADIAQQ
SSERERVAVDAERDTDQLKKAEYMLDKVGEEFEGMISSVTSFGMFIELDNTVEGLIRLGM
LTDDYYHFDDKQMILLGERTSKIYRIGDAITVRVARVNMEDHTIDFELKDMPKSNRPERA
DRGARPPRGDSDRKGGRGGDRGKNKAAGKAAKFGKAAKAAKASKAPTASVAPTADSGSKK
PARRKRKPSTVSGQTSAVSVPNTQQPRATENTVSASTSNSEGAPKKAKGISTHAPKSSSK
DNSRNFNFGSGKGGYNSPVESSKKRKGSPAPRRKKIEGPVFDPEAGNIQTSSAKADPSKT
GGEVKKSRPRKRKPKPTEQKPE
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgattactgaacaacaagtattagatgtaataaaaagtatcgactataaaccaatgact
tatcaagaattggagcagcagctagagattcaagcggcttcagactttaaagaattggtc
aaaatattaaatgaacttgagcgtacaggaatcatcgtacagaacaagtctcatcattat
ggtctaccggaacatatggatttggttcgtggacgtattcaagctcatgccaaaggattt
gcttttctaattcctgaggaaaaagagcatggtgatgtctatatcaatgccaatgatatg
ggaaccgcaatgaacggggatatcgtgtttgttaaagtgacgtctcgcagtacgacagga
ggtcgtatggaaggtgaagtcattcgtgtcatcactcgcaaaaatacacgtgtggttggt
gtattccaaggattggatacgtacggatttattattccagatgataagcggattaaccgc
gatatttttgtgcccaaagaagcattcggtggtgcagtagaaggcgaaaaagtggttgct
gaaattgtcagctacccagaaggcagagcagcagcagaaggacgaattgttgaagtgttg
ggtcacaaagatgatccgggcgtagacatcttgtctgttattcgtaagcatcaactgcca
gagtctttccctgatgaaattatggatgaagcgcaagcggctcctgattccattacagat
gcagagatcgtcgaacaaggcagacgcgatctacgtgacaaaaatatcgtcacgattgat
ggcgaagatgccaaagacttggatgatgctgttaatgtagagcgtctagacaacggacat
taccgtctaggcgtgcatattgcagacgtaggttactatgtcaaagaaggctctaagctc
gatatcgaagcttacaaccgtggatgtagtgtgtatctagtggatcgcgtgattccaatg
ttgccacatcgtctatcgaacgggatctgtagtcttcatccacaggtagatcgtctaact
ctttcatgcgaaatggaattcgatgagcatatgaaagtcgtgaagcacgaagtatttacc
agtgtaatcaaaaccaaagagcgtatgacgtataccaatgtacgcaaaattttggaagat
gaagatccagaattgttagagcgttatgctccgcttgtcgaagatttcaaattaatgcgt
gaacttgcgatgcagttacgtgagatgcgtgctcgtcgtggcgcagttgattttgatttt
gacgaagcgaaaatcattttagatgaaaaaggcagaccgatcgatattgtgaagcgtgag
cgttctgttgcagaacagattatcgaagagtttatgctagctgcgaacgagactgtagcc
gagcatttcagtacacttcaagtgccgttcttgtatcgtattcatgagaatccagatcaa
gaaaaattacagaacttcttagcatttgcttctaactttggtcatgttatcaaaggaaca
ggcgatcatgttcatccacgtgcattgcaacaattgttgcaagatatcaaaggtgaaaaa
gaagaaacagtaatcagcacaatgatgcttcgttcgatgaaacaagcgaaatattccgca
gacagttcaggtcactttggactagccgccgattactatagtcactttacatcaccgatt
cgtcgttatcccgatctggttattcaccgtgtcattcgtgaagtgatcgaaaatggtggt
aagcttaagccgaagcgtcaagattatctgaattcacgtatggcggatattgcacagcaa
tcttcagaacgtgaacgtgttgctgtagatgcagagcgtgataccgatcaactgaaaaaa
gcagagtatatgctggataaagtaggcgaagaattcgaaggtatgatcagcagtgttact
agtttcgggatgtttatcgaactggataatacggtagaaggtctgatccgcttaggtatg
ctgactgacgattattatcattttgacgataaacaaatgatcttacttggtgaacgtact
tccaaaatctatcgtatcggtgatgcgattaccgtacgtgtagctcgtgtgaatatggaa
gatcatacgatcgactttgagctgaaagatatgccgaaaagcaatcgtcctgaacgcgca
gatcgtggcgctcgtcctccacgtggagatagcgaccgtaaaggcggacgtggcggagat
cgtggtaaaaacaaagcagctggtaaagcggcgaagttcggtaaagcagcgaaggctgca
aaagcgagcaaagcgcctacagcatctgtagctccaaccgcagatagtggtagcaaaaag
ccggcaagacgcaaacgtaaaccatctacagtctctggtcaaacgagtgctgtaagtgta
ccgaatacacaacagccgcgtgctacagaaaatacggtatctgcgagtaccagtaatagt
gaaggtgcgcctaaaaaagcgaaaggcatttcgactcatgctccgaaaagttcgagtaaa
gacaactctcgcaacttcaacttcggttcaggtaaaggtggctataatagccctgtcgaa
agtagcaaaaagcgtaaaggcagtccagcaccaagacgtaaaaagatagaaggccctgta
ttcgatccagaagcaggcaatatccaaacgtcttctgccaaagcagatcctagcaaaaca
ggtggcgaagtgaaaaagagtcgtccacgtaaacgcaaaccaaaaccaacagagcaaaaa
cctgaataa
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