Paenibacillus nuruki: AASFL403_21340
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Entry
AASFL403_21340 CDS
T09651
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pnk
Paenibacillus nuruki
Pathway
pnk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AASFL403_21340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnk03019
]
AASFL403_21340
03009 Ribosome biogenesis [BR:
pnk03009
]
AASFL403_21340
Enzymes [BR:
pnk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AASFL403_21340
Messenger RNA biogenesis [BR:
pnk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AASFL403_21340
Ribosome biogenesis [BR:
pnk03009
]
Prokaryotic type
rRNA helicases
AASFL403_21340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF5333
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAJ1317762
LinkDB
All DBs
Position
403:4777705..4779501
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AA seq
598 aa
AA seq
DB search
MKNFNEFGISPNVVELMASNGITQPTEVQQMSIPGLLKGGDAIVQAKTGTGKTLAFLLPI
FEKLNLNAVGAPQALIIAPTRELALQIATEANKLAAAYEGVRILAAYGGQDVERQLRKLE
GGCHLVVGTPGRLLDHMGRGTLDLTKIRTLVLDEADQMLHMGFLPDVEKMINATSPARQT
MLFSATIPDGIRRLSAQYMRTPKDIRVGPAESVPLKLIRQLVVECTPRGKLSALREYLEQ
EKPYLAVIFCRTKKRAAELNQQLKELGYSSDELHGDLSQNKREQVMRAFREAKLQLLVAT
DVAARGIDVEGITHVFNYDIPQDAEYYIHRIGRTGRAGETGKAITFVTPHDRDELQAIEQ
GTSQKLERQIARTSIESDDSGELLSNVEAKAGRRATHKSRDQDRKKDGKRGDARRGAYRE
ESSGGRSGGRGKPSSTSERDRFASRGGTGKRGERKESTPSVRTTARPEAKEASARSERPE
RSYGRKDQARSGSGSAPRPTRRTDDAPSFRRDASKGRTISSGDSDRTREYGGAGSNSNAG
GRRSEGTGSARGERTYGGKNNSSSGGRNNRPSSGKPSSGGRPSSSGRPSDNARRGGKR
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaattttaatgagttcggcatctcgccgaatgtcgtagagctaatggcttccaat
ggaatcacacagcctaccgaagtacagcagatgtcgattccgggattgcttaaaggcgga
gacgctatcgtccaagccaaaacaggtacaggtaaaacgttagcatttttgctaccgatt
tttgaaaagttgaacttgaatgcagtcggtgcacctcaagcgcttatcatagcaccaacc
cgtgagttggctctacagattgctacagaagcgaacaaattagctgcggcttatgaaggt
gtacgtattcttgctgcttatggtggacaagatgtagaacgtcagttgcgtaagcttgaa
ggtggatgtcaccttgttgtcggtacgccaggtcgtctgcttgaccatatgggtagaggc
acactggatctaacgaagattcgtacattggtactcgatgaagcggatcaaatgctacac
atgggatttttacctgatgttgaaaaaatgatcaatgccacttctccagcacgtcaaacg
atgttattttcggcaacgattcctgatggtattcgtcgtctgtctgcgcaatatatgcgt
acaccgaaagatattcgtgtcggtcctgctgaaagtgttccgttgaaattgattcgtcaa
ttagtagtagaatgtacacctcgtggtaaactttctgcattgcgtgaatatttggaacaa
gaaaaaccttatctggctgtaattttctgtcgtaccaaaaaacgggcagcagaactgaat
caacagcttaaagaattgggttattcttcggatgaacttcatggcgatttgtctcaaaat
aaacgtgagcaagtaatgcgtgctttccgtgaagcgaaattgcaattattggttgctacc
gatgtagccgctcgtggtattgatgttgaagggattacccatgtattcaactatgatatt
cctcaagacgctgaatactatattcaccgtatcggacgtacaggtcgtgcaggcgaaacc
ggtaaagcaatcacatttgtaactcctcatgatcgtgacgaattgcaagcgatcgaacaa
ggaacttcgcagaaattagagcgtcagattgctcgtacttcgatcgaatccgatgattct
ggtgaattgttgtcgaacgtagaagccaaagcaggcagacgagctactcataaatctcgt
gatcaagatcgtaaaaaagatggcaaacgtggagatgcacgtcgtggtgcttaccgtgaa
gaatcttctggtggacgctcgggtggtcgcggaaaaccttcttcgacttcagagcgtgat
cgttttgcaagtagaggcggtacaggtaagcgtggagaacgtaaagaatctacaccttct
gtacgtacaactgctcgtccggaagctaaagaagcaagtgctcgtagcgaacgtccagaa
cgcagttatggtcgtaaggatcaagctcgctcaggtagcggttctgctccaagaccaaca
cgtcgcacagacgatgctccttctttccgtagagatgcttccaaaggtcgcacgatttcg
tcaggtgattcagatcgtacacgtgaatacggtggagctggaagtaacagcaacgctggt
ggtcgccgtagcgaaggcacaggtagtgctcgtggagaacgtacctatggcggtaaaaac
aacagcagttccggtggacgcaacaaccgtccgtcttcgggtaaaccatctagtggtggt
cgtccttcttcttccggtcgtccgtcagataacgcacgtcgtggtggaaaacgttaa
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