Paenibacillus nuruki: AASFL403_22420
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Entry
AASFL403_22420 CDS
T09651
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pnk
Paenibacillus nuruki
Pathway
pnk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pnk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AASFL403_22420 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnk03021
]
AASFL403_22420 (rpoC)
03400 DNA repair and recombination proteins [BR:
pnk03400
]
AASFL403_22420 (rpoC)
Enzymes [BR:
pnk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AASFL403_22420 (rpoC)
Transcription machinery [BR:
pnk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AASFL403_22420 (rpoC)
DNA repair and recombination proteins [BR:
pnk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AASFL403_22420 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CAJ1317974
LinkDB
All DBs
Position
403:5035537..5039151
Genome browser
AA seq
1204 aa
AA seq
DB search
MIDVNNFEFMKIGLASPDKIRSWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEVIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGHGFHAGMGAEAIKRLLQ
DLDIDKELEFLREELRTAQGQRRNRAIKRLEVIEAFRNSGNFPDWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKE
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL
NPKDGKPVVTPSQDMVLGSFYLTMDNDEAKGSGMILRTVNEAVSGYQRGVASLHARVAIP
VKALNKTSFTEKQQTGMMVTTIGRIIFNEIFPESFPYINEPTRRNLFQGTPDHYFIYDKG
VNIREFISSVPQTGAIGKEYLGSIIARCFEIYHTTLTSIILDKIKQLGFTYSTRAGITVG
VSDVIVPVEKQGILDESDKKVAVITNQYRRGLITNEERYDRVIEIWSRTKDDITEVLMKS
MDRYNSIMLMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFLS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDKGFTVSRIQDGKEVIEDL
YDRLEGRYCFETVRHPKTGEILARRNELLDSDKAEAIVEAGVEKLQIRSVLSCRAKHGVC
KTCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQAIISEIDGVVKEIRETKDRREIEVEGEAETKVYPVTYGSRLRVKEGMEIEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKIRI
IDAGETTLLPGSFVDMYEYENANRVAIMADKEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDKLLGLKENVIIGKLIPAGTGMNRYRSVKFEDAEKFEAKKPGLET
VTVE
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgatagacgttaacaatttcgaatttatgaaaattgggctagcttccccagacaaaatt
cgttcttggtcccgcggagaagttaaaaaaccggagacaatcaactatcgtacgcttaaa
ccagagaaagacgggttgttctgtgaacgtatttttggaccaaccaaagactgggaatgc
cactgcggtaaatacaaacgtgtacgttacaaaggcgtagtctgcgatcgttgcggcgtt
gaagtaacacgcgctaaagtacgtcgcgaacgtatgggacacattgagcttgcagctcct
gtatctcacatttggtatttcaaaggtattccaagccgtatgggtctagcacttgatatg
tctccacgttctttggaagaagtaatctacttcgcatcttatgttgtaacagatccaggt
gagacaccgctggagaaaaaacaacttttatctgaaaaagaataccgtagctaccgtgaa
aaatacggtcatggtttccatgcaggtatgggtgcagaagcgattaaacgattgcttcaa
gaccttgatattgataaagaactagaatttttacgtgaagagctacgtacagctcaaggt
caacgtcgtaatcgtgcgatcaaacgccttgaagttatcgaagcattccgtaactctggt
aacttccctgattggatgatcatggatgtattgccagttatccctccagaacttcgtccg
atggtacagttggatggtggacgttttgcgacgtctgacttgaatgatctgtatcgtcgt
gtaattaaccgtaacaaccgtcttaaacgtctattggatctaggtgcacctgacattatc
gtacaaaatgagaaacgtatgcttcaagaagctgtcgatgctcttattgataatggtcgt
cgtggtcgcccagttacaggaccaggtaaccgtccattgaaatctcttagtcatatgcta
aaaggtaaacaaggacgtttccgtcagaacttactaggtaaacgtgtcgattattctggt
cgttcggttatcgttgtaggtccttacttgaaaatgtaccaatgtggtcttccaaaagag
atggcactagagttattcaaacctttcgttatgaaagaattggttaacaaaggtcttgct
cataatatcaagagcgcaaaacgcaaagtagaacgtgtaagtccagaagtatgggatgta
cttgaagaagttattaaagaacatccagttcttctaaaccgtgcacctactctgcataga
cttggtattcaagcatttgaacctattttggttgaaggacgtgcaattcgtcttcaccca
cttgtatgtacagcatataatgctgactttgatggtgaccaaatggcggttcacgttcca
ttgtctgctgaagcgcaagcggaagcacgtatcttgatgcttgcatctggtaacattttg
aaccctaaagatggtaaaccagttgttactccttcacaggatatggtcttgggctcattc
tatctaactatggataatgatgaagctaaaggttcaggtatgattttacgtacagtgaac
gaagcagtatcgggttaccaacgtggcgttgcttcattgcatgctcgtgtagcgatccct
gttaaagctttgaacaaaacaagctttacagagaagcagcaaacaggaatgatggtaaca
actatcggacgaattatctttaacgagattttccctgaatcattcccttacattaatgag
ccaacgcgtcgtaacttgttccaaggtacaccggatcattactttatctatgacaaaggt
gtgaatatccgtgaatttattagtagtgttcctcaaacaggcgctatcggtaaagagtat
ttaggttcaattatcgctcgttgttttgaaatctaccatacaacattaacatctattatt
ttggataaaatcaagcaacttggattcacttattctacgcgtgcaggtattactgttggt
gtatctgacgttattgttcctgttgaaaaacaaggaatcttggatgagtctgataaaaaa
gttgctgttattacgaatcaataccgtcgtggtttgattacgaatgaagagcgttatgat
cgtgttattgagatctggtctcgtacgaaggatgacattactgaagtccttatgaaatca
atggatcgctataactctattatgcttatggttgactccaaagctcgtggtaacaaatcg
cagatcactcagcttggtggtatgcgcggtctgatggcgaatccatcgggtcgtatcatc
gaacttccaattaaatcgaatttccgtgaaggtctgacagtattagaatacttcctttct
actcacggagcgcgtaaaggtttggcggatacagcacttcgtactgctgactcaggttac
ctaactcgtcgtctagttgacgtagcacaagatgtaatcgtacgtgaagaagattgtgga
acagataaaggtttcactgtaagccgtattcaagatggcaaagaagttatcgaagatctt
tatgatcgtttagaaggtcgttattgcttcgaaactgttcgtcatccaaaaacaggtgag
attcttgctcgtcgtaacgaattgctagattcggataaagctgaagcgatcgttgaagct
ggagttgaaaaacttcaaatccgttcagtactgagttgtcgtgcaaaacacggagtatgt
aaaacatgttacggtcgtaaccttgctactggtaaacacgttgagattggtgaagcagtt
ggtattattgcagcacaatctatcggtgaaccaggaacgcagcttacaatgcgtacgttc
catactggtggtgttgcaggggacgatattactcaaggtttgccgcgtattcaagagctt
ttcgaagcgcgtaatcctaaaggtcaagcaatcatcagtgaaattgatggtgtggttaaa
gaaatccgtgaaactaaagaccgtcgtgaaatcgaggttgaaggtgaagcagagactaaa
gtttaccctgtaacttacggttcccgcctaagagttaaagaaggtatggaaatcgaagct
ggggatgaactaacagatggttcgattgaccctaaagaaatgctacgtatcaaaggtatc
cgtggcgtacagaactatatcctgcaagaagtacaacgcgtatatcgtaaccagggtgta
gaaatcaatgataagcacgttgaagttatgatcagacagatgttacgtaaaatccgtatc
atcgatgctggtgaaacaacattgttgccaggttcatttgttgatatgtacgaatatgag
aatgcgaacagagtagcaatcatggctgacaaagagccagcagttgctaaaccagtattg
cttggtattactaaagcatctctggaaactgattccttcttgtctgcggcatccttccag
gaaacaactcgtgtcctgacagatgcagcgatcaaaggtaaagtcgataaattacttggt
cttaaagagaacgttattatcggtaagttgattccagctggtacagggatgaaccgttat
cgtagcgttaaatttgaagatgcagaaaagtttgaagccaagaaacctggtcttgaaacg
gtaactgttgagtaa
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