Candidatus Protochlamydia naegleriophila: PNK_0741
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Entry
PNK_0741 CDS
T04212
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pnl
Candidatus Protochlamydia naegleriophila
Pathway
pnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PNK_0741 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnl03019
]
PNK_0741 (recQ)
03400 DNA repair and recombination proteins [BR:
pnl03400
]
PNK_0741 (recQ)
Enzymes [BR:
pnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PNK_0741 (recQ)
Messenger RNA biogenesis [BR:
pnl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PNK_0741 (recQ)
DNA repair and recombination proteins [BR:
pnl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PNK_0741 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
HTH_7
Motif
Other DBs
NCBI-ProteinID:
CUI16367
UniProt:
A0A0U5JD95
LinkDB
All DBs
Position
cPNK:879111..881288
Genome browser
AA seq
725 aa
AA seq
DB search
MMKEMNKALINEGYLEERLKEFFGYNAFRAHQKGIIQAVLNQEDVVAILPTGAGKSLCYQ
LPALLQSGTAIVISPLISLMQDQVVSLFKNGIAAAFLNSSLSYQDMQQVLNHLNDYKLIY
VAPERFADPIFIERLKNIDVSFFVIDEAHCISQWGHSFRQEYRKLSILKETFPTKPVMAL
TATATREVEKDLIIQLLMRDPVLIKGSFDRPNLTIHIHPKIQSDKQLMKFLQEHANQSGI
IYASTRKGVETTYAQLLQAGFPVGRYHAGLSDQERALSQQDFQHDKVTLMVATVAFGMGI
HKPDVRFIVHLDMPRTIEQYYQEIGRAGRDGLPADCLMLYGLQDLVLYKAFAEDLTDPIL
RQEMKKKTDSLYRLCTSPECRRKGLLNYFSESFPEGECQACDNCLDDDNKFDGSVIAQKI
LSCVYRVQQQVGVRIVIDVLRGSSSQVIMQKGYQELSTFGLLADRSSEELRYYIESLIQM
GFLMRTEGDYPVLKWTEQTKSVIIGHQKVYFRKKLFHEKKEKVKSKPKEAQALYYHEELY
EALKQLRTEFARSEQVPPYVVFSDRALQEMATFFPRDQQAFSRINGVGPIKWVKYGAQFL
LLVQQHALVHESNWPQEASSPTPPYQRQHSREETVRLYQLGHGIEGIMEQRGLARSTVLS
HLVESIQQGLDLDLSGLISADKREAIQQAIAQIGAERLTPIKELLPEAITYEEIRLVSAY
YQRAL
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaagagatgaataaagccttgattaacgaggggtatcttgaagaaagattgaaa
gaattttttggctataatgcttttcgtgcgcatcaaaaagggattattcaagctgttttg
aatcaagaggatgtggttgccatcttgccgacaggggctggaaagtctctgtgctatcag
ctaccggcccttttgcagtctggaacggcgattgtaatttcgcctttgatttcattgatg
caggatcaagtcgtttctttgtttaaaaatggcattgcggcggcttttctgaatagtagt
ttatcttatcaagatatgcagcaggtactcaatcatttaaatgattataagcttatttat
gtggctccggagaggtttgccgaccctatttttattgaacggttgaaaaatattgatgtt
tcattttttgtgatagatgaagctcactgcatttctcaatgggggcattcttttcgtcag
gaataccggaagctttctattttgaaagaaacgtttcctaccaagcctgtgatggctttg
acggcaacagctacgcgggaagtggaaaaagatttgatcattcagctccttatgagggat
ccagtccttattaagggaagctttgacaggccgaatttaaccattcacattcatcccaag
atacaatcggataagcagctcatgaagtttctgcaagagcatgctaatcaatcgggcatt
atttatgcgtcaactcggaaaggagtagaaacaacctatgcacagcttttgcaagcaggc
tttccggtggggcgttaccatgcgggtttgtcagatcaagagcgtgctttatcgcagcaa
gattttcagcacgacaaagtcactttaatggttgcgacagttgcttttggaatgggaatt
cacaagcctgatgtgcgcttcattgtacatctcgacatgccgcgtacgattgaacaatac
tatcaagagattggacgagcagggcgggacgggcttccggccgattgcctgatgctgtat
ggtctgcaggacttggttttatataaagcttttgctgaggatctgacagatcccattctt
cggcaggaaatgaaaaaaaagacagacagtctttatcgtttatgcacatcgccagaatgc
cgccgtaaagggttgttaaactactttagcgagtcctttcccgagggagagtgtcaagct
tgtgataactgtctggatgatgataataagtttgacggatcggtcatcgcccaaaaaatt
ctctcatgtgtttaccgtgttcagcaacaagtaggtgtgcgcattgtcattgacgttttg
cgcggctcgagcagccaggtcatcatgcaaaaaggctatcaagaattgtcaacattcggc
ttactggcagatcgatcttcggaagagcttcgctactatattgagtctttgattcagatg
ggttttctaatgagaacagagggagattatcccgttttaaaatggaccgagcagaccaaa
tctgtcataatagggcaccagaaggtctatttcaggaagaagctgttccatgaaaagaaa
gagaaggtaaagtctaagcctaaggaggctcaagctctttactatcatgaggagctgtat
gaagccttgaaacaattgaggaccgaattcgctcgctctgagcaggttcctccctatgtc
gtatttagtgatcgtgccttgcaagaaatggcaacctttttccctcgagaccagcaggct
ttttctagaattaatggagtgggcccaattaagtgggttaagtatggagcgcaatttctt
ctgctcgttcagcaacatgccctggttcacgaatcgaactggccgcaagaggcaagttcg
ccaacaccgccctatcagcgccaacattcgagagaagagacggttcggctatatcagctt
gggcatggaattgaagggatcatggagcaaagagggctagcacgaagcactgtcttgagc
cacttagtcgaatccatccagcaagggctcgatctcgatctttcaggactcatttctgcc
gacaagcgagaggctattcagcaagctattgctcaaataggagcagagaggctgacgccc
attaaagagctgttgccagaggcaattacatatgaagaaatccgcctggtcagtgcttat
taccaaagagctctttaa
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