Candidatus Protochlamydia naegleriophila: PNK_1018
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Entry
PNK_1018 CDS
T04212
Symbol
dbp2
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pnl
Candidatus Protochlamydia naegleriophila
Pathway
pnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PNK_1018 (dbp2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnl03019
]
PNK_1018 (dbp2)
03009 Ribosome biogenesis [BR:
pnl03009
]
PNK_1018 (dbp2)
Enzymes [BR:
pnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PNK_1018 (dbp2)
Messenger RNA biogenesis [BR:
pnl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PNK_1018 (dbp2)
Ribosome biogenesis [BR:
pnl03009
]
Prokaryotic type
rRNA helicases
PNK_1018 (dbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
Helicase_RecD
UvrD-helicase
SecA_DEAD
AAA_22
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
CUI16641
UniProt:
A0A0U5ER78
LinkDB
All DBs
Position
cPNK:1233105..1234676
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AA seq
523 aa
AA seq
DB search
MTPENQSPVEEFNFDQFGLKEPIVQALHEAGFKTPSPIQKQAIPAVLAGHDMVAQAHTGT
GKTAAFGLPALHLISEKPGTQLLVLTPTRELASQVSDELFRLGRHLGIRTATICGGKSFR
PQIEALQRGVQVLVATPGRLLDLLESDSLTDFRPAIVVLDEADEMLDMGFLEAIQKIFTF
LPAKRQTLLFSATMPPQIQRLAQQILKSPLFISVTQKETTNKDIKQVYYVIREEERDDAI
LRLLDSEEPSKAIIFCRTKKDVDRLSTLLVASGYHARGLHGDMEQPQREEVIRHFRAEQI
RVLVATDVAARGLSVSDVSHVFNYHLPFDPASYVHRIGRTGRAGNKGMASTFVTLREWRD
FQRYEKIIGAPIKRELIPNLEDVKKLKRQKLVDRIQGQAVHQDVSLVLELMVEMDHATMA
SKFISFVLDQETIQGPDNIGVEPRGQERETKGQRSDRFNDERRRANNNGPKKFSGKPGGF
KKDFDKGGYKKSGFPKNRSNAGNYSTRSGSGSAGGFKERARAV
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgaccccagaaaatcaatcacctgttgaagaatttaattttgatcaatttggcttaaaa
gagccgattgtacaagcactgcatgaagccggatttaaaacgccgagcccgattcagaag
caagctattccagcagtattagctggacatgacatggttgcgcaagcccatacaggtact
ggaaaaacggcagcttttggccttccggctttgcatttgatcagcgaaaagccaggcaca
cagttgttagttttgactccgactcgtgagcttgcaagccaagtaagcgatgagcttttc
cgcctaggccgtcatttgggaattcgcactgctacgatttgcggtggaaaatcttttaga
ccacagattgaagccttgcagagaggagttcaggtactcgtagcgactcctggtcgtttg
ctcgatcttctagaatctgacagtttaacagactttagaccagcgattgttgttctagac
gaagccgatgaaatgctagacatgggctttttagaagccattcaaaagattttcactttc
ttgccagcaaaaagacaaacattgctattttcagcaacgatgcctccacagattcaacgt
ttggcacaacaaatcttgaagagcccattgtttatcagtgtgactcaaaaagagacaact
aacaaagacattaagcaagtttactatgtgattcgcgaagaagagcgcgatgatgcgatt
ctccgcttgctagatagcgaagaaccaagcaaggcgatcattttctgccgtacgaaaaaa
gatgtcgatcgtctttcaactttgctcgttgctagtggataccatgcgcgtggcttgcat
ggagacatggaacagcctcagcgtgaagaggtgattcgtcatttccgcgccgaacaaatt
cgcgtcttagtcgcaacagacgttgctgcaagaggattgagcgtatcggatgtgtctcac
gttttcaattatcacctaccattcgatcctgcgagctatgtacaccgtatcggccgtaca
ggaagagcaggtaacaaaggtatggcgagcacgtttgtgactttgcgtgaatggcgcgat
ttccaacgttatgaaaaaatcattggcgctccaattaagcgagaactcattccaaatctc
gaagatgtgaaaaagctaaaacgccagaaactggttgatcgcattcaaggtcaagctgtt
caccaggatgtttctttagtcttggaactgatggttgagatggatcatgcgactatggct
tctaagttcatctctttcgtattggatcaagaaacgattcaaggcccagataacatcggc
gtcgagccaagagggcaagaaagagaaacaaaaggacagcgttccgaccgttttaatgac
gagcgtcgcagagctaataataatggtccaaagaagttttctggtaagcctggtgggttt
aaaaaagactttgataaaggcggttataagaaatcaggctttccaaagaatcgctccaat
gctggcaactactcgactcgttcaggtagtggcagtgcaggcggatttaaagaacgcgcc
cgcgcagtctaa
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