Candidatus Protochlamydia naegleriophila: PNK_1625
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Entry
PNK_1625 CDS
T04212
Symbol
uvra3
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
pnl
Candidatus Protochlamydia naegleriophila
Pathway
pnl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PNK_1625 (uvra3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnl03400
]
PNK_1625 (uvra3)
DNA repair and recombination proteins [BR:
pnl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PNK_1625 (uvra3)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PNK_1625 (uvra3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
ABC_tran
UvrA_DNA-bind
SMC_N
AAA_29
nSTAND1
RsgA_GTPase
AAA_21
AAA_16
nSTAND3
AAA_22
AAA_25
AAA_23
NACHT
cobW
Viral_helicase1
KaiA
Motif
Other DBs
NCBI-ProteinID:
CUI17234
UniProt:
A0A0U5JF58
LinkDB
All DBs
Position
cPNK:1918809..1924502
Genome browser
AA seq
1897 aa
AA seq
DB search
MNNEKIILKKVRIHNLKSVDLTLEKNELVVFTGVSGSGKSSLAFDTIYTEGQRRYVESLS
TFARRQLGELSKPDLEHASGISPTISIEQKTAGRNPRSTVGTLTEIYDYLRVLYARIGIP
HCPISGEAVTPQSRERIIKSVQNLPLRTKIIVLAPYAKGKKAEFKEDFQELIRKGFMRAR
VDGILVNLTDELVLDGNVGHDVDVVIDRLTVESNAQSRIADSITQALQLGQGVCSVLDVD
SQNEQLFSMHAYSPQSGLSYTSLEPHDFSFNSPSGMCPRCHGMGTIHEFDLEQIIDPNLS
IADNCCSIASPYQTVRYGNIYDNLAEQYNFSVQTPWKKLSSSARKVYLYGTDKKWTRMHF
VHPVTGARWTDHIQWKGVLHDAHTRFSEAKSENYRKKMQKLMSIQTCPECQGARLKAYPA
ATVLQGKRISELSAMTVADCSRFFEHLTLSTQDTLIAEELLKEIRQRLQFLLEVGLHYLT
LDRTAPTLSGGEAQRVRLASQIGCGLVGITYILDEPSIGLHPRDNRKLIDTLKHLRDMGN
TVIVVEHDEETIWEADRIVDFGPGAGVKGGKILINGDLTDLIESKESITGAYLTGKRQID
IPKKRRKPQKECLEIKGAKHHNLKSIDVKIPLGMFLAITGVSGSGKSSLITDILYPALSN
ELHGGEHQVGDHRGIKGIDNIDKVIAIDQSPIGRNPRSNPATYIKLFDEIRDLFCQLPES
QARGYKPGRFSFNVKEGSCSQCEGMGMIKIDMDFMEDAWVDCPLCKTKRFDTETLSVLYK
GKNIYDVLEMDVSEALEFFANIPAIKHKLETLSQVGMEYIKLGQASTTLSGGEAQRIKLA
KELVRPATGKTLYILDEPTTGLHFHDIKHLLQVLHALVEKGNTVLVIEHNMDVVKTADWI
IDLGPEGGDGGGEIVAIGHPEHIAKLESPTGHAVRHALYPHTEQKIEAALEMGKHRRKDK
REREAHVIREITVTGAEQNNLKQVSVTIPREKITVCTGPSGSGKSSLAFETIYAEGQRRY
IESLSPYARQFVKQMPKPKVGHVSGLSPAIAIEQKAHAGNPRSTVGTMTEVYDYLRVLFA
RLGIAHCPETGEVIKAISKELVVERILSFPEQEKLQILAPIELNKNEKFEELLLKLQRQG
FLRIRLNGEFYNLEQEAIALIPFDRKRKNELFLVIDRLKADSSMKARIFEAVENATSIGD
GKLVVMREKEDVPFNLSFAVESTGKSYPEITPHTFAFNTPEGMCPDCMGLGYQYGANLSH
HADILSHSIIGLMRFLWQEEFSQAAFSFLELVLDKEGIDPYTPLKKLSTDHIQFLMQGPS
EERWYTASNGIRYRWIGINHVLAKAGRSAVTEKREAIIPLLQEQTCLSCQGARLNPLARH
VTIQDLSIHDVCSLPIEQTLNFIKKLKLQPQDKKLLEEVHTQLINRLNFLCEVGLHYLSL
ERRAPTLSGGEAQRIRLARQLGSGLTGVLYVLDEPTIGLHPRDNARLNAALKKLKDLGNT
LLMVEHDPLTIATADYLLDFGPASGEHGGHITARGTLKQLQRSAHSLTGAYLSGKKSIPL
PNKRRALDKGQLIIRNTSKNNLKAISVSIPTGALTCLTGVSGSGKSTLLQQVLLPALDRR
ANNDAVDVEGALVSGLSHFDKVISIDQDPIGHTVRSDVGTYVDVLSRIRDFFVSLPAAKM
KGLQPKHFSYNHRKGMCTGCWGLGYRRVEMHFLPAVKVVCEDCQGLRLNPVSLEVTYAGK
NLGQYLDTTVDEARIAFQNHPRIVRILDTLIAVGLGYLKLGQETASLSGGEAQRLKLSRE
LAKRSTGRTLYLLDEPTTGLHSDDIQKLLHVLHRLVDKGNTMIIIEHHLDMIKNADYIID
LGPEAGEKGGQIMGTGTPEQIAKLTSSWTGHYLKDVL
NT seq
5694 nt
NT seq
+upstream
nt +downstream
nt
atgaataacgagaaaattattttaaagaaagttcgcattcacaatttaaagtctgtggat
ttaactttagaaaaaaatgaattggtcgtctttacaggagtttcaggctcgggaaagtct
tctttagcctttgatacgatttacactgaagggcaaagacgctacgtcgaatctctctcc
acatttgctagacgccaacttggcgaactttccaaaccagatcttgagcatgccagcggt
atttctccaacgatttcaatcgagcaaaagactgctggacgcaatccccgctcgacagtc
ggcaccttgaccgaaatttacgactatttgcgcgtcctctacgcccgcattggtattcct
cattgcccgattagtggagaagcagtgactccgcaaagccgtgaaagaatcattaaatcg
gtccagaaccttcccctccgcactaaaatcatcgttttagctccctatgccaaaggtaaa
aaagctgaattcaaagaagattttcaagagcttatccgcaaaggattcatgcgtgcaaga
gtcgatggaatattagtcaatttgacggatgaattagtcctggacggaaatgtggggcac
gatgtagacgtagtcatcgaccgcttgacggttgaaagcaatgcccaatcgcgcattgct
gactccataacccaagccttacaactaggtcagggagtatgtagtgtcctggatgtcgat
tcgcaaaacgaacagctattctctatgcatgcctactcgccccaatcaggcctctcctat
acgtcgctcgaaccacacgacttttcttttaatagtccatcgggaatgtgtcctcgctgc
catggaatgggaacaattcatgaattcgatctggaacaaatcatcgatccgaacttgagc
attgcagacaattgctgctcgatcgcgagtccctaccaaacggtccgctatgggaatatc
tacgacaatctagccgagcaatacaactttagcgttcaaacgccttggaaaaagctatcc
tcaagcgcccgtaaagtctacttatatgggacagacaaaaaatggacgaggatgcatttt
gtccatccagtcacaggtgctcgctggaccgatcatattcaatggaaaggggttttgcat
gatgcccatacccgcttttccgaagcgaaaagcgagaattatcgcaaaaaaatgcagaag
ctcatgagcattcaaacatgtccagaatgccaaggagccaggctcaaagcgtatccagct
gccacggtcctgcaaggcaagcgaatcagcgaactctctgccatgactgttgcagactgc
tcccgcttctttgaacaccttaccctctctacgcaagataccttaatcgcggaagagctt
ctcaaagaaattcgtcaaaggctgcagtttttgctagaagtagggctccattacctcact
ctcgaccgcacggctcccactctttctgggggagaagcccagcgcgtgcgccttgcgtcc
caaatcggatgtgggcttgttggcatcacctatattttagatgaaccgtcgattggactt
catccacgcgataaccgcaaattgattgatacgctcaagcacctgcgtgatatgggtaat
acggtcattgtcgtcgaacacgatgaggaaactatttgggaagctgaccgcatcgtcgat
tttggtccaggcgctggtgtcaaaggtggaaagattctcatcaacggcgatctgaccgac
ctcatcgagagtaaagagtcgatcacaggcgcttacctgacgggtaagagacaaatagat
atccccaaaaaacggcgcaaaccccaaaaagaatgcctggaaatcaaaggcgccaaacac
cacaacctcaaatcgatcgatgtaaaaatccctctcggaatgtttctagccatcactggc
gtatcaggctctggaaaatcttcccttattactgatattctctatccagccctatccaac
gaactccatggcggagaacatcaagtgggcgatcatcgaggcatcaaaggcattgacaat
atagacaaagtcatcgcaatcgatcaatccccaattgggcgcaatccccgatccaatcca
gcgacctatatcaaattatttgatgaaattcgcgatttattctgtcaacttcccgagagc
caggcaagaggctataagcctggacgcttcagctttaacgtcaaagagggatcctgttct
cagtgcgaaggaatgggaatgatcaagatcgatatggacttcatggaagatgcctgggtc
gattgtcccctttgtaaaacaaagcgattcgacacagaaacactctctgtcttgtacaaa
gggaaaaacatctatgacgtcctcgaaatggatgtctctgaagccttggaattttttgcc
aatattcctgccatcaagcataaattggaaacgcttagccaagtgggaatggaatacatt
aaattgggacaggcctcaacaaccctttctggcggcgaagcccagcggattaaattggcc
aaagaactcgtccgccccgccacaggcaaaaccctgtacatcttagacgaaccaacgact
ggactccacttccacgacatcaaacacctcttgcaagtactccatgccttagtcgaaaaa
ggcaataccgttctcgtcatcgaacacaacatggatgtagtcaaaacagccgattggatc
atcgatcttgggcccgaaggaggagatggcggcggagaaattgttgccataggccatcct
gaacacatcgccaagctcgaatctccaactggtcatgccgttcgccatgctctctacccg
cacaccgaacaaaagatcgaagcggcactagaaatggggaaacatcgccgcaaagataaa
cgggagcgagaagctcacgtcattcgggaaatcaccgtgacaggcgccgaacaaaacaac
ctcaagcaagtatctgtcacgatcccgcgcgaaaaaattactgtctgcactggcccatca
ggatctggaaaatcttccttagctttcgagacgatctatgcggaaggccaaaggcgctat
atcgaatcactctccccctatgctcgtcaatttgtcaagcaaatgcctaaaccgaaagtc
ggacacgttagcggcttatcccctgcaattgctatcgagcaaaaggcacacgcaggtaat
ccccgcagtacggttggaacgatgacagaagtctatgactacttgcgcgttttgttcgca
aggcttggaatcgcccactgccctgaaaccggcgaagtcatcaaagcaatcagcaaagaa
ttggtcgtcgagagaattctctctttccccgagcaagaaaagctccaaattttagctcct
attgaacttaataagaatgaaaaatttgaggagctgcttctcaaattgcaacggcaagga
tttctacgcatacgtctcaatggagagttttacaatctcgagcaagaagccatcgcactg
attccattcgatcgcaaacgaaaaaatgaactctttcttgtcatcgatcgcttaaaagcc
gattcttcaatgaaagcgcgtatcttcgaggccgtggaaaatgcaacatccattggcgac
ggaaaattagtcgtcatgcgcgaaaaagaagatgttcccttcaatttgtcttttgccgtt
gaaagcacaggaaaatcatacccggaaattactccccacacatttgcctttaatactcct
gagggaatgtgtccggactgcatgggattgggataccaatatggagccaatctttcccac
cacgccgacattttgtcccactcgatcatcggcctgatgcgcttcctctggcaggaagag
ttcagccaagccgcttttagcttcttagagcttgtgctagataaagaaggaatcgaccct
tacacccccctaaagaaattatcgaccgatcacattcaatttctcatgcaaggcccttct
gaagagcgctggtatacagcttccaacggcatccgctaccgctggatcggaatcaatcac
gtcctcgcaaaggccggtagaagcgccgtgaccgaaaagcgggaagcgatcattcctctc
ttgcaagagcaaacatgtctttcatgccaaggagcaagactcaatccgcttgcacgccac
gtgacgatccaagacttgtcgattcacgatgtctgcagtcttccgattgaacaaactctc
aacttcatcaaaaagttaaagctccaaccgcaagataaaaaattgctcgaagaggttcac
acacagctcatcaatcgactaaactttttgtgcgaagttgggcttcactatctctccttg
gaaagacgcgcccccaccttaagcggcggcgaagctcagcgcattcgcctggctaggcaa
cttggcagtggattaacaggcgtcctatacgtcttagatgaacccaccatcgggcttcat
ccacgcgataatgcccgcctcaacgcagccctcaaaaaattgaaagatctcggcaatacc
ctcctcatggtcgaacacgatcctctaactattgcaacagcggattatctgctcgacttt
gggccagcgtctggcgaacatggcggacacatcacggcaagagggaccttaaaacaactg
cagcgcagcgctcactcgctaacaggcgcctacttatcaggcaaaaaaagcattcctctg
ccaaacaaaaggcgcgcactcgataagggacagctaatcattcggaacacttctaaaaac
aatttgaaagctattagcgttagcattccaacaggagccttaacctgccttactggagtc
tccggatcgggtaaatcaactcttttacaacaggtcttactgccagccctagacagacgc
gcaaataatgatgcggtcgatgtagagggtgctcttgtgtcaggcctctctcatttcgat
aaagtcatctcaatcgatcaagaccctatcggtcatacagttcgatccgatgtgggaacc
tatgtcgacgttctttctcgcatccgcgatttcttcgtctctttgccagctgctaaaatg
aagggattgcaacccaaacacttcagctacaaccatcgcaaaggaatgtgcactggctgc
tggggcttgggctaccgccgcgtcgaaatgcattttctaccggccgttaaagtcgtttgc
gaagactgccaaggattacgcctcaatcccgtaagcttagaagtgacttatgccggcaaa
aatcttggccaataccttgacacaacggttgatgaagccaggatcgcattccaaaatcac
cctcgcatcgtacgcattttagatacgctcatcgcagtggggctcggctacctcaagctc
ggccaagaaacggctagcttatcgggaggagaagcccaaagacttaaactcagccgtgaa
ctggctaaacgctccaccggacgcacgctttacctcttggatgaaccaacaactggactc
cacagtgacgacatccaaaaactgctgcacgtacttcaccggctggtcgataaaggcaat
actatgattattatcgagcatcatttggatatgatcaaaaatgctgactacatcatcgac
ttgggaccagaagctggagaaaaagggggccaaatcatgggaacgggaacgccagaacaa
atcgctaagctcacctcttcctggacgggtcactatttaaaagacgttttataa
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integrated database retrieval system
