Candidatus Protochlamydia naegleriophila: PNK_1984
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Entry
PNK_1984 CDS
T04212
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pnl
Candidatus Protochlamydia naegleriophila
Pathway
pnl03030
DNA replication
pnl03430
Mismatch repair
pnl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PNK_1984 (dnaE)
03430 Mismatch repair
PNK_1984 (dnaE)
03440 Homologous recombination
PNK_1984 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pnl03032
]
PNK_1984 (dnaE)
03400 DNA repair and recombination proteins [BR:
pnl03400
]
PNK_1984 (dnaE)
Enzymes [BR:
pnl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PNK_1984 (dnaE)
DNA replication proteins [BR:
pnl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PNK_1984 (dnaE)
DNA repair and recombination proteins [BR:
pnl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PNK_1984 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
HHH_3
ATG16
Cdh1_DBD_1
Motif
Other DBs
NCBI-ProteinID:
CUI17588
UniProt:
A0A0U5JFK0
LinkDB
All DBs
Position
cPNK:complement(2318072..2321836)
Genome browser
AA seq
1254 aa
AA seq
DB search
MTTPFIHLRTHSQYSILDASASITDLAQRAAQDGMKAMALTDHGNLFGIVDFYKACKDAK
VKPLIGCELYVAPGSRLEKTKVPGLRAAYNLTLLAKNKQGYQNLCKLSSAGYIEGFYYYP
RIDQDLLKQHSEGLICLAGSLGTRLSHEILQGTPDSILEHLNWYREVFKDDYYLDLQRHQ
MTAEDIQSDGLYQESWLVQQYQDYRDRQQKVNTALISLSQEHQIPLVATNDIHYIDREDW
RAHEILLNVQSGEPCEIWEKDAYGNPKFRVPNPKRQTYPSHEYYFKSAEQMVSLFQDIPE
AISNTEKIAELCHVEIDFKTKHYPVYLPPSLENATYGKEEQREEVEKFLWKLCEEGIPTR
YTPERLAKVKEIYPEKDPMQVIRERLDYEMSIIVPKGMSDYLLIVWDFINWAKRNGIPMG
PGRGSGAGSIVLYLIGITDIEPLRFHLFFERFINPERISYPDIDVDICMDRRGEVIAYTL
QKYGKDNVAQIITFGTMKAKMALKDVGRVLSVPLAKVNEIAKLVPEDLNITLDKALEKDQ
DLRQLYENDEEVGRLIDLAKKLEGSIRNTGIHAAGIIISGAPLTELIPICNSKDSDMPVT
QFSMKPVELVGMLKVDFLGLKTLTAIQICVNAIKASTGKCIDWINLPLDDKPTFDLLNQG
KTLGIFQLESGGMQDLARQLHLDRFEEIIAVGALYRPGPMDMIPSFINRKHGREVIENDH
PWMKDILAETYGIMVYQEQVMQIASKLANFSLGEGDVLRRAMGKKDMDQMAKQREKFRLG
ALENQIDEQTSMLVFDKMEKFAAYGFNKSHAAAYGYVSYVTAYLKANYPREWMAALMTCD
RDDLAKVAKFIRECQSMNIPMLPPDVNEAGDAFQATKQGIRFAMTGIKGVGTGVVEAIIQ
ERQKGGPFKDFYEFFKRIDTKKVGKKVIESLVEAGSFDFTGWSRDALVMSIDPIYESVSK
EQKEQALGILSLFSKMDDSMASKFSKAPDIKHKTPRQEVLRKEKALLGFFLTGHPMDEFK
DILQRLSCVPLRRLDQLDHDAVFRSAFIVESLQVRISAKSQKKFAILTISDGIERQELPI
WPDLYEEKSHLLQENQLLYAVLQVGKKEEDVRLSCRWLDDLTKANEEMIDTCDKAYDKAK
HQIARFAQNKNAMAKQSADKAKNAKPAQPKDKEKEAPTMKIVTIRLDADSARLSHVMKLK
KLIQEHHGDTPVQIQFHNQVKSLATLHVDSKWGVALNDQFKQKVSELACVLAIE
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccccatttattcatcttcgcacccattctcaatattcgattttggatgcatcc
gcttctattaccgacttagcccaaagagcggcccaagatggtatgaaagcaatggctttg
accgatcatggcaacttgtttggaattgtcgatttttataaggcttgtaaagatgccaag
gtaaagcctttaattggctgcgaattgtatgtagcgccaggttcccgtttggagaagaca
aaagtgcctggtttgcgcgcggcttacaatctcacgctcctagcaaaaaataagcagggc
tatcaaaacttatgcaagctgtcatctgctggctatatcgagggattttattattatcct
agaatcgaccaagatctcctcaaacaacacagtgaaggcctcatttgcttggctggtagc
ttgggaacgcgtttgtcacacgaaattttgcaagggacgccagatagcattttggagcat
ttgaactggtaccgggaagtctttaaggatgactactacttagacttgcagcgccaccaa
atgacggcagaagatattcaatcagacggcctctatcaggaatcttggcttgtgcagcag
tatcaggactatcgcgatcggcagcagaaggtcaacacggctcttatctccctgagtcaa
gagcatcaaattcccttggtagcaaccaatgacatccactatatcgatcgggaagattgg
cgcgcacatgagattcttctcaacgttcaatcgggagagccttgtgagatttgggaaaaa
gatgcctatggcaatcctaaatttcgtgtacccaatcccaaaaggcagacctatccctcg
catgagtattattttaagtctgcagagcaaatggtctccctttttcaggatattccagaa
gctatttctaatactgaaaagattgccgagctttgtcatgtagaaatcgacttcaaaacc
aagcattatccggtttatttacccccaagcctagaaaatgcgacttatggaaaagaagag
cagcgcgaagaagttgaaaagttcttatggaagctgtgtgaagaggggattcctacccgt
tatacgccagagagattagccaaagttaaagaaatttatcctgaaaaagatcctatgcag
gtcattcgggagcgcttagactatgaaatgagcattatcgttccaaagggaatgagcgac
tacttactcatcgtttgggacttcatcaattgggcaaagcgcaatggcatcccgatgggt
ccagggcgtggatcgggagcgggttccatcgttctttatctcattggcatcacagatatc
gaaccgttacgcttccacttgttctttgagcgctttattaatcccgagcgtatctcttat
cccgatatcgacgtcgatatttgcatggataggcgcggcgaggtgattgcctatacgctg
caaaagtatggcaaagacaatgtggctcagatcattacgtttggtaccatgaaagccaaa
atggctttaaaagacgtcggacgagtcttgagcgtgcctttagctaaagtgaacgaaatt
gcaaaattggttcccgaagacctcaatattacgctcgataaggctctagaaaaagatcaa
gatttgcgccagctatacgaaaatgacgaagaagttggccgcttaatcgatttggctaaa
aagcttgaggggtcgattcgcaacaccggtatccatgctgccggtatcattattagcgga
gcgcctcttacagagttgattccgatctgcaattccaaagattctgacatgccggtcacg
cagttttcgatgaagccggttgaattggttggcatgttaaaggtggactttttaggtttg
aaaacgttgacggcgattcaaatttgcgtcaatgcgattaaagcgagtactggaaagtgt
attgattggatcaatcttccattagatgataagccaacctttgacctcttaaaccaaggt
aagactctcgggattttccagttggagtctggaggcatgcaggaccttgcacgtcaattg
cacctcgatcgctttgaagaaattattgcggtgggcgccttgtatcgtccgggtccgatg
gatatgattccttcttttatcaaccgtaagcatggacgggaagtgattgaaaacgatcac
ccctggatgaaagacattttagcagaaacctatggcatcatggtttaccaagagcaggtc
atgcagattgcaagcaagcttgccaacttctcgctaggggaaggtgacgtcttgcgccgc
gccatgggaaaaaaagacatggaccagatggccaagcagcgcgagaaatttcgcttgggc
gctttggaaaaccagatcgacgaacagacttccatgctggttttcgacaaaatggaaaaa
tttgctgcgtatggatttaataagtcgcacgcggcagcttatggttacgtttcctatgtc
acagcctacttaaaggcaaattatccccgcgagtggatggcagcgttaatgacttgcgat
cgggacgatctggcaaaggtggccaaattcattcgcgagtgccaaagcatgaatatcccg
atgcttcctcccgacgtcaatgaagcgggtgatgcttttcaagccaccaagcaaggaatc
cgctttgctatgacggggattaaaggggttggaacgggtgtcgttgaggctattatccag
gagaggcaaaaaggaggtccgtttaaggacttctatgagttttttaagcggatcgatacg
aaaaaagtgggtaaaaaagttattgagagtttggtggaagctggtagttttgattttaca
ggctggtctagagatgctttggtgatgagcattgatccgatttatgagtcggtttcaaaa
gagcaaaaagagcaggcgcttggcatactctccctcttttcaaagatggatgatagcatg
gcgagcaaattctctaaggctcctgatatcaagcataaaacgccgagacaagaagtgttg
cgcaaggaaaaagcgttgcttggtttctttttgacggggcatcccatggatgagtttaaa
gacatcctacagcgcctctcttgcgttcctttgaggcgtttagatcaattggatcacgat
gctgtcttccgatcagcctttattgtcgagtcactgcaagttaggatttcagcaaaatcc
caaaagaaatttgccattttgacgattagcgatgggattgaaaggcaggagctgcccatt
tggcccgatctttacgaagaaaagagccacctgctgcaggaaaatcagctgctgtatgct
gtcttacaagtaggaaaaaaagaggaagatgttcgattatcctgtcgctggttagacgac
ctgaccaaggccaacgaggaaatgattgacacctgtgataaggcttacgataaagccaag
catcaaattgctcgatttgctcaaaataaaaatgcaatggctaagcagtctgccgataaa
gccaaaaatgctaagccagcgcagccgaaagacaaagagaaagaggcgcctaccatgaag
attgtgactattcggttagatgccgatagcgcgcgtttaagccatgtgatgaaacttaag
aaattgattcaagagcaccatggagacacaccggtccaaattcagtttcacaaccaagtc
aaatctttagcaacgttgcatgttgacagtaaatggggagtggccttgaatgatcaattt
aaacaaaaggtgagcgagctcgcatgcgtcttggcaattgaataa
DBGET
integrated database retrieval system
