Candidatus Protochlamydia naegleriophila: PNK_2001
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Entry
PNK_2001 CDS
T04212
Symbol
rapA
Name
(GenBank) swi/snf helicase
Organism
pnl
Candidatus Protochlamydia naegleriophila
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
CUI17605
UniProt:
A0A0U5JHY3
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All DBs
Position
cPNK:2342320..2345091
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AA seq
923 aa
AA seq
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MSEIAYTLDRQEIDKTGYVAIRLAELTKEGFTHHLNHPIPSAALAKWRALASQEKDKQAL
SLLIKEELAYQQKWTGRTPHAESMTSSLFHIPAAQSVPILNVLGATQKLYFNGKQLVVDF
IGHVDFYYEITPLEAQRIEIKGRLKWRDTDIELQACDCIGPGKPQWFIRGISLKGISTPL
SWKELQRAFQTKPWILEGPHKAAFLEEFEEEDPDFPGLVIKESSSSAQDLYQQTAPHPLL
ILKDRLGAFADLWMEYGEGLRVALHDPRPILQETKGSFRLKRQSNAEQGFEKDLLETDFI
KKAVSTSHYYCPIDKVAKSLTFLLEIGWSIQDWQGNRVVKQDALNLELEDNAQSFKVKGR
VRYEMHEADVGAVLGAFNRRERFIQLNPGTVGLLPELTAQHPLRELAEEGEIVGQEVRVK
KSHFGALSSLFEQAQLPSSLTAFKEKWESFSGIQSVQPSPFFSGTLRPYQQEGLNWLAFL
SDFGFHGILADEMGLGKTVQVLAFLSRLPSDVKHLIVVPTSLLFNWKNEIHRFLPHLSCY
VHQGPTRAKTIEELKPHSIILTSYTTLRLDLPLLQKENFHSMILDEAQVIKNARTQTSQA
VCSLQSHFRLCLTGTPIENHMGELWSHFHFLIPDLFGSEESFMADIQAASSDRRYLDRIK
KKIAPFVMRRRKQEVAKDLPPRIDQTVWVEMSDEQRALYDRLLAGFKGNLLKKVEVEGMG
KHRLEVLEAILRLRQICCHPLLISSLSEELEENAQTSAKFEALTQDLQTIVDEGSKVLVY
SQFTSMLQLMTRFAKQQGWSYAYLDGSTLNREKVVTEFQKDAAQSIFFISLKAGGVGLNL
TAADYVLLYDPWWNEAVEEQAINRAHRIGRQDQVIAKRFVVAESIEEKMMKLKAAKRSLV
EDVFDLDTNPAQLTIDDLRFLLD
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaattgcttatacgttagatcggcaggaaatagataagactggctatgttgcc
attcggctggctgaattgactaaagagggattcacccatcatttaaaccacccaatccct
tccgcggctcttgctaaatggcgcgcccttgcatcgcaggaaaaagacaaacaagccttg
agtctgctcatcaaagaagagctcgcttatcaacagaaatggaccggccgcaccccccat
gccgagagcatgacctcttccctctttcatattccagcagctcaatccgttcccattttg
aatgttttaggagcgactcaaaagctttactttaatgggaagcagctcgttgtagacttc
attggccatgtcgacttttactacgaaatcactccgctagaggcgcaacgaatagagata
aaaggacgtttaaaatggcgcgataccgatatcgagcttcaggcttgcgattgcattggc
cccggtaaaccccaatggttcatacggggaatctctttaaaagggatttccactccactt
agctggaaagagcttcaaagagcctttcaaaccaagccatggatcttagaaggccctcat
aaagcggcctttctagaggagtttgaggaggaggatcccgactttccagggcttgtcatc
aaagagagttctagttcggcccaagatctctatcagcagacggcaccccatccacttctc
atcttgaaggatcgcttaggggcctttgcggatttgtggatggagtacggagaaggcttg
cgggtcgctttacacgatccccgccccatccttcaggaaactaaaggaagttttcggctt
aagaggcagtcgaatgccgagcaaggctttgaaaaagatttgcttgagaccgattttata
aaaaaagcagtctctacgtcccactattactgcccgatcgacaaggtagccaaaagcctg
actttcttgctcgaaatcggctggtcgattcaggattggcaagggaatcgcgtagtcaag
caagatgctctgaacttagagttagaagacaatgcccagtcatttaaggtcaagggacgg
gtacgctatgaaatgcacgaagccgatgtaggcgccgttttgggggcctttaatcgacgc
gagcgcttcattcaattaaatccaggcacagtcggattattgcccgaattaactgcacag
catcctttacgcgaacttgcagaagaaggcgaaattgttggacaagaggtgcgcgtcaaa
aaaagccactttggagccctctcctccttattcgaacaggcgcagcttccctcatcgctt
acagcctttaaagaaaagtgggaaagcttttctggcatccaatcggttcaaccaagccca
ttcttttcaggaactcttcgcccttaccagcaggagggtttaaattggcttgctttcttg
tccgattttggcttccatggcattttggcagatgaaatgggacttggaaaaacagtccaa
gtactcgcctttttatcccgtttaccttcggatgtcaaacatctcattgtcgttcctacc
tctttgctgtttaactggaaaaatgaaatccaccggtttttaccccatttatcttgctat
gtccaccaagggcctacgagagccaagacaatcgaagagctaaaaccccattcgatcatt
ctcacttcttacacgaccctaagactcgacctgcctcttctacaaaaagaaaacttccat
agtatgattttggatgaagcccaagtcatcaaaaatgcgcgcacccaaacgtcgcaggcc
gtctgttctcttcaatcgcactttcgcctttgcttgacaggaacgcctattgaaaatcac
atgggcgagctatggtcccattttcactttctcatccccgatctttttggatcggaagaa
agtttcatggccgacattcaagccgcaagctccgatcggcgctatttggatcgcattaag
aaaaaaatcgccccttttgtcatgcgaagacggaagcaagaggttgccaaagatttaccg
cccagaatcgatcaaaccgtatgggtggaaatgagcgatgagcaaagagctctttacgat
cggctgttagccggatttaaaggcaatctacttaaaaaagtggaagtagaaggcatggga
aaacatcgcttagaagtcttagaagccatcttgcgactacgccagatctgctgccatccc
ctactcatttcttccttatcagaagagctagaagagaatgcccaaacgagtgctaaattc
gaagccttaactcaagatctgcaaaccattgtcgacgaagggagtaaagtcttggtttat
agccaatttacctcgatgttgcagctcatgacccgctttgccaagcagcaaggatggtca
tatgcctacttggatgggagcaccctcaaccgtgaaaaagttgtgacagaatttcaaaag
gatgcggctcaatccatctttttcatcagccttaaagcaggcggagttggattgaattta
accgctgccgactatgtgctattgtacgatccttggtggaacgaagcggttgaagagcag
gccatcaaccgtgcccaccgcatcggccggcaagatcaggtgatagccaagcgcttcgtc
gttgccgaaagcatagaagaaaagatgatgaagctgaaagccgcgaaacgctccttagtg
gaagatgtcttcgatttagacacgaatccagcccagctaaccatcgatgatttacgtttc
ttgttggattaa
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