Candidatus Protochlamydia naegleriophila: PNK_2308
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Entry
PNK_2308 CDS
T04212
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
pnl
Candidatus Protochlamydia naegleriophila
Pathway
pnl02020
Two-component system
pnl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pnl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PNK_2308 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PNK_2308 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnl03021
]
PNK_2308 (rpoN)
Transcription machinery [BR:
pnl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PNK_2308 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
ZapG-like
Motif
Other DBs
NCBI-ProteinID:
CUI17906
UniProt:
A0A0U5JH25
LinkDB
All DBs
Position
cPNK:complement(2703371..2704846)
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AA seq
491 aa
AA seq
DB search
MSSTDTPSSTLQMQQSINLTQRLIMSAHMQQAIHLLQLPLLELEPFIEEQVNSNPLLDVV
SEEAGEEASTEREGEGPIGEREEQEVTIDDRDLAILTRLDEDLRDHFSATEDMPIKRTSD
EDRLKAYLENSICAETSLYAHLQQEAHDTFDSKEERAIAEILIGYIDSNGFLKTPLSEIC
MWHNLQEDAVKAVLATIQTFEPYGIGASSIQDSLLIQLSCLGKAGTLAYRLVEEYYEELL
HNHIPLIQKELKCSFEEIQAAIEKDIAKLDLHPGTQFSLLTVQPIIPDVTLRQEGEQLIV
EVDRDRAPTLKVNRNYLNLLNDESVPLETKQFIKRHLFSARWLVRNLQQRYSTIERIAQS
LAEKQYEFFMQPDGQLKPLTMKVLAEELELHESTIARTVANKYIDSPRGVFSLRTFFTTK
YISEEGDDLSSKTVKDAILELVNGEDKCHPLSDEKISHLLKQKGIICARRTVAKYRMALQ
IGNTQQRKKFH
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgactgataccccttcttctaccttgcaaatgcagcagtcaataaacttgacg
cagcgtttaatcatgtctgctcatatgcagcaagccatccatctgcttcaattacctctt
ttagagctcgaacctttcattgaagaacaagtgaattccaaccctctcctcgatgtggtg
tctgaggaggcgggagaagaggcttctacggaaagggaaggagaggggccgatcggagag
agagaggagcaagaggtaaccattgacgatcgcgatctcgccattttaaccaggctcgat
gaagatttaagggatcatttttctgctacagaagatatgcctatcaagagaacctctgat
gaggaccgtttaaaggcctatttagaaaattccatctgtgctgaaacaagcctttatgca
catttacagcaggaggcgcatgatacatttgacagcaaagaagaacgagccattgcagag
attctaattggttatatcgattcaaatggctttttgaaaacaccgctttctgaaatttgc
atgtggcacaatcttcaagaagatgctgtcaaagcagtcttagcaactattcaaacgttt
gagccatatggaattggcgcttcatccattcaagactctctgctcattcaattgagctgc
ttaggaaaggcaggcacgcttgcttatcgccttgtcgaggaatattatgaagagctgctt
cacaatcacattccattgattcaaaaggaattaaagtgctcttttgaggagattcaagct
gcaattgaaaaggatattgccaaattagacctgcacccgggtacgcaattctctttgctg
actgtacagccgattattcccgatgtcactttgcgtcaagagggggagcagttaattgtt
gaagtcgatcgggatcgggcgcccactttaaaagtaaatcgcaattatttgaacttgcta
aacgatgagtcggttccactggaaaccaagcaattcatcaagaggcatcttttttcagca
cgttggcttgtccggaatcttcagcagcgctattccacaatagagcggattgcgcaatcg
ctggctgaaaagcagtatgaattttttatgcaacccgatggacaattgaagcctttgacc
atgaaggtgttggccgaagagcttgagctccatgaatcgacgattgccagaacggtggcc
aataagtatatcgacagtccgaggggtgtcttttcgttgcgaaccttttttacaacgaag
tatatttcggaagaaggagatgacctttcgtcaaaaacagtgaaagatgccattttggaa
ctggtcaacggcgaagataaatgtcatcctctttccgatgaaaaaatttctcatttgctc
aagcaaaaagggattatttgtgcaaggcgtacggttgctaagtatcgcatggctcttcag
atcggcaatacccagcaacgcaagaaatttcattag
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