Candidatus Protochlamydia naegleriophila: PNK_2311
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Entry
PNK_2311 CDS
T04212
Name
(GenBank) UvrD-like DNA helicase family protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pnl
Candidatus Protochlamydia naegleriophila
Pathway
pnl03420
Nucleotide excision repair
pnl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PNK_2311
03430 Mismatch repair
PNK_2311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnl03400
]
PNK_2311
Enzymes [BR:
pnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PNK_2311
DNA repair and recombination proteins [BR:
pnl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PNK_2311
MMR (mismatch excision repair)
Other MMR factors
PNK_2311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
PhoH
DEAD
ResIII
DUF6511
Motif
Other DBs
NCBI-ProteinID:
CUI17909
UniProt:
A0A0U5JIV5
LinkDB
All DBs
Position
cPNK:complement(2707570..2709753)
Genome browser
AA seq
727 aa
AA seq
DB search
MDKVFSLNPEQQDAVETLEGPVLVLAGAGSGKTRVVTSRIVHLIENGISPSNILGVTFTN
KAAQEMRERICKLTQHQVLICTFHSLGARVLRECIHALGYQRDFTIYDEEDVEKLVKACL
VELNLKDKKMDAKPFRQMISQAKNALQQPDQLLHFDQSSDIEQAFPSVYALYQRKLQEYQ
AVDFDDLLFLTVRIWREHPGLLMRYQDKWPFVLIDEYQDTNAAQYTMTQLLVEKRRNLFV
VGDPDQSIYSWRGANVQNILNFERDYPGAKVIRLEQNYRSRMNILNTANALISHNTNRIE
KELWSELGDGEKIKLYIGEDERAEAEFVASQVTYHKAQHKIALNDMVIFYRTNAQSRVFE
DYLLYRGIPYVIVGGISFYQRREIKDILAYLRFSQSGADYIAFARTINLPKRGLGDATIE
KIRQGANEEGMTILAFCEALLKETPMRAIVRLTAKQKEGLAAYIQVIHDLRVLSKKGSIR
ELVLGAIEQTGYLSYLMEDKETYEERRENLDELITKAVEWEISAPDPSLEAFLEELSLKS
SLDEADQSQDRLSLMTIHNGKGLEFKTTFLVGLEEDLFPHVNSKNNREDVEEERRLCYVG
ITRAKEYLYLSFCHTRYLWGNLRFQKPSRFLKELPSEYIEKCRQAQIVSKYALPEHPQRE
NVTYVQKPVPQNVEEFEPGATIFHKDFGIGQVKEAYQGSMGLTYKIFFTKDNSLKTLVAK
YAVLSRV
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggataaagtatttagtctcaacccagagcagcaagatgctgttgaaactctagaagga
cctgttttagttttggccggagccggttccgggaaaacgcgcgtggtcacatcgagaatt
gttcatttgattgaaaatggcatttctccttccaatattttaggggtgacattcacgaat
aaagcggcgcaagagatgcgtgagagaatttgcaaactgacgcagcatcaagtgctgatt
tgcacctttcacagtctgggggcaagagtattgcgcgaatgcattcacgcgctgggctac
cagcgcgattttacaatctatgacgaagaagatgtagaaaagctcgtcaaagcttgtttg
gtcgagctgaatttgaaagataaaaaaatggatgcaaagccttttcgacaaatgatttcg
caggcaaaaaatgctctgcaacagccagatcaacttttgcattttgaccagtcaagtgat
atcgaacaagcctttccgagcgtctatgcgttgtatcaaagaaagctgcaagagtatcag
gcggtggattttgacgatcttctttttttaacggttagaatctggcgcgaacatcctgga
cttttgatgcgctatcaagataaatggccttttgtcttgatcgatgaatatcaagacacg
aatgcggctcagtacaccatgactcagctcctagtcgaaaaaagacgcaatctattcgtt
gtgggcgatcccgaccaatccatttattcatggagaggagccaatgttcaaaatattttg
aactttgagcgggactacccaggagccaaagtcatccgcttggagcaaaattaccgcagc
cgcatgaatattttgaacactgcgaatgctttgatcagccacaataccaatcgcattgaa
aaggaattgtggagcgagctgggcgatggagagaaaattaagctctatattggagaagac
gagcgtgcggaagccgaatttgtggcatcgcaagtaacttaccataaggctcagcacaag
atcgccttgaatgacatggtcatcttctatcgcactaatgcgcagtcacgggtttttgaa
gattatctcctttatcgaggcattccttatgtaattgtgggtggtatttctttctatcaa
aggcgtgaaatcaaagatattttagcctatttgcgcttttcgcagtcgggagccgattac
attgcatttgcccgtaccattaatttgcctaagcggggacttggcgatgcaacgattgaa
aagatcaggcaaggcgccaatgaagaaggaatgacgattttagccttttgcgaagctctc
ttgaaggaaacccccatgcgcgccattgtgcgcttaacggctaagcaaaaagaggggctc
gcagcctatattcaagtcattcacgatctgcgtgtattgagcaagaagggatcgatccgc
gagcttgttttgggagccattgagcagactggttacttaagctacctcatggaagataaa
gaaacttatgaagagcgaagagaaaacctggatgaattgatcacgaaggcagtcgagtgg
gaaatatctgctccagacccatctttagaagcttttttagaagagctttccctaaagtct
agcctggatgaggcagaccaatcccaggatcgtttaagcctcatgacaattcataatggg
aagggattagagtttaaaaccacgttcttagtcggattggaagaggatctttttcctcac
gtgaattctaaaaataaccgtgaagatgtcgaagaagagcgcaggctttgctatgtgggg
attacaagagctaaggaatacctctatttaagcttttgccatacgagatatttatggggt
aatctccgtttccaaaagcctagccggttcttaaaagagctgccatcggagtatatagaa
aagtgtaggcaagcccaaattgtgtccaagtatgctttaccagagcatcctcaacgggag
aatgtgacctatgtgcaaaagcctgttccgcaaaatgttgaggagtttgagcctggagct
acgatttttcataaagacttcggcataggtcaggtgaaagaggcttatcagggctcgatg
ggattgacctacaaaattttcttcaccaaggacaatagcttaaaaaccttggttgccaaa
tatgcggttttgagccgcgtatag
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