Candidatus Protochlamydia naegleriophila: PNK_2401
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Entry
PNK_2401 CDS
T04212
Symbol
recd3
Name
(GenBank) exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pnl
Candidatus Protochlamydia naegleriophila
Pathway
pnl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PNK_2401 (recd3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnl03400
]
PNK_2401 (recd3)
Enzymes [BR:
pnl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PNK_2401 (recd3)
DNA repair and recombination proteins [BR:
pnl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PNK_2401 (recd3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
Helicase_RecD
UvrD-helicase
AAA_22
SLFN-g3_helicase
PIF1
PhoH
NPHP3_N
SH3_13
AAA_16
AAA_28
UvrD_C
ResIII
DEAD
Mg_chelatase
Motif
Other DBs
NCBI-ProteinID:
CUI17996
UniProt:
A0A0U5CSI6
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All DBs
Position
cPNK:complement(2811422..2813305)
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AA seq
627 aa
AA seq
DB search
MQSGLAKARFSESYNRSPWLEVGKEKRPVWPTMDSLLAKQRLTYLDYVLTHRLLRDQLVG
QEVALFICHLLIAAQEGHLCVRIENGHLFPAVYQLWSQEGDDHLSSEESQFLTDLILKGS
KEVPLELMTVMQEGEDHEPPQTPLCVFQNSFYLQRHWIFETLFLKHLLRHLDGMPVLEVS
REYLEKELTHLRKSGALLEEQAEAILTGCLSPLTLITGGPGTGKTYTAGRLIQLFWNSLN
EEQRKECQIALAAPTGKAAANLQKSLSKVANELKDCPPLQAKTLHSLLNMRSSSSFAKES
AIRLTADLIVVDESSMIDVKMMATLFESLKKGSRIILLGDQHQLPSVEAGSLFVDLIKLH
QAQPALAIPCTNLKVCLRAELGSIVSFAQTINQGKALQAIDLLNQADIPGISRLHLPAER
KESQKLFLSHVMNYFPSLIRSHQDPEQLLNLFNAIRILSPMRKGSFGVESINQLLWQHVS
QMRHPNGWLAIPIMVVTNDYRQDLFNGETGVLMRKLPLKTVSTEDYALFPSRNAGETVRR
LPALLLPRYEFAYCLSVHKSQGSEFDRVILVLPEGSELFGREVFYTAVTRARKHIEVYGT
DLIIQKTISLQGSRLSGVEQRLATAKI
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcaggccttgctaaagcccgtttttctgagtcttataaccgttccccgtggttg
gaggtgggcaaggagaagagacctgtttggcctactatggattctcttttagcgaagcag
cggctcacctatttggactatgtgctgactcatcgtttattgcgcgatcagctcgttggt
caggaagtggccttattcatctgccatctcttgattgctgcccaagaggggcatttatgt
gtccgcatcgaaaatgggcacttgtttccagccgtttatcaattatggtcgcaagagggg
gatgatcacttgtcatccgaagagagtcagtttttaactgatttgattttaaagggttct
aaggaagtccctcttgaactcatgactgtcatgcaggaaggagaggatcatgagccgccc
cagacacccttgtgcgtttttcagaacagcttttatctgcagcggcactggatttttgaa
acgctttttttgaagcatctcttgaggcatttggatggcatgcctgttttggaggttagt
cgagagtatttagaaaaagagcttacgcatcttcgaaagagcggtgccttactggaagag
caggcggaggctattttgactggatgcttatctcctttgaccttgattacgggcggacct
ggaacgggtaaaacgtatacggcgggacgcctcatccagcttttttggaatagtttaaat
gaggaacaaaggaaagagtgtcaaattgcgttggcagctcccactggcaaagcagcggcg
aacttgcaaaaaagcttgagcaaagtggcgaatgagctcaaggactgtcctccattgcag
gctaaaacgcttcactctttattgaacatgagaagttcatcctcttttgcaaaggagtcg
gctatccgcttaacggccgatctgatcgtcgttgatgagagttcgatgatcgatgtaaag
atgatggctactttgtttgagtctcttaaaaaaggatcgaggatcattttattaggagat
cagcatcaattgccatctgtagaagcaggcagtttatttgtagacctgattaaattgcat
caagcgcagccagcccttgccattccttgcaccaatttgaaagtctgtttgagggccgag
ctgggctctatcgtgtcttttgcgcaaacgatcaaccagggtaaggcgctccaagccatt
gacttgctcaatcaggctgatatcccaggcatttcccgtctccatttgccagctgagagg
aaagagtctcaaaagctatttttgagccatgtcatgaactattttccctcccttattaga
tcgcatcaagacccagaacagctgctgaatttgttcaatgccatccgcattttatcaccc
atgcgtaaaggctcttttggagtggagtctatcaaccagcttttatggcagcatgtgagc
caaatgcgtcatccaaatggatggcttgccattcccatcatggttgtgacaaatgattac
cggcaagaccttttcaatggtgaaacgggcgttttgatgcgcaagcttcctttgaaaaca
gtgagcacagaagattacgccctttttccttcccgcaacgcaggagaaacagtgcgccgt
ttgccggcgcttttgctgccaaggtatgaatttgcttattgcctgtctgtgcataaaagt
cagggtagcgagttcgatcgggtcatcttagtattacctgaagggtcggagctatttggc
agagaggttttttacacggctgtgacgcgcgcgcgcaagcacattgaagtctatgggaca
gatctcatcattcagaaaaccatttctttacaaggctcgcgcctttcgggcgtagaacag
cggctggcgacagcaaagatttaa
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