Candidatus Protochlamydia naegleriophila: PNK_2456
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Entry
PNK_2456 CDS
T04212
Symbol
alkA
Name
(GenBank) putative DNA-3-methyladenine glycosidase II
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
pnl
Candidatus Protochlamydia naegleriophila
Pathway
pnl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PNK_2456 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pnl03000
]
PNK_2456 (alkA)
03400 DNA repair and recombination proteins [BR:
pnl03400
]
PNK_2456 (alkA)
Enzymes [BR:
pnl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
PNK_2456 (alkA)
Transcription factors [BR:
pnl03000
]
Prokaryotic type
Helix-turn-helix
AraC family
PNK_2456 (alkA)
DNA repair and recombination proteins [BR:
pnl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PNK_2456 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
Sigma70_r4
HTH_28
RecR_HhH
HHH
Motif
Other DBs
NCBI-ProteinID:
CUI18050
UniProt:
A0A0U5JHG8
LinkDB
All DBs
Position
cPNK:complement(2879241..2880689)
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AA seq
482 aa
AA seq
DB search
METTNPIFYKAYCSRDPRFDGVFYVGVTSTGIYCRPICPAKTPKEENCRFFKSAEAAEKV
SFRPCLRCRPELAPGNAPVDDAHRLANLIIHRLKEGMLDEEESLEEIAHHFNLSSRHIRR
IIQQEFGVSPMELLLTRRLLLAKQLLSETSLSITEIAFSSGFSSLRRFNDAFSKRYGMPP
SRVRKGIKQRFVKPVPSETITLQLNYRPPFDWEALLTFLKARSLKGVEYIWDGNYARTVQ
LGQQRGWVCVRHAPEKNALYVEVSQSLLSVLPALLGRLRNLFDLSARPDSIATQLGQDPL
LAEALTKNPGLRVPGAFDGFELAVRAVLGQQITVKAATTFGGRVVKAFGECIETPYPELY
RLAPTPQRMASLRVEELTALGIIQARAKTIITLAEEMASNRLKIEAGLHPEETIKQLIAL
PGIGKWTAHYIAMRALRWPDAFPKEDIVLRKKLGGVSASQAEILSQAWRPWRSYATLYLW
LL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaacaaatccgattttttacaaagcctattgttcacgcgaccctcgcttcgat
ggagtcttttatgtcggtgtgacctcgacgggcatttattgccgtccgatttgcccagcc
aagactcccaaggaggagaattgccggttttttaagagcgccgaggcggctgaaaaggtt
tcttttcgcccgtgtctacggtgccgtcctgaattggcgcctggaaatgcccctgtcgat
gacgcccatcgtctggcaaatttaatcatccatcgcctcaaagaggggatgctagatgaa
gaggagagccttgaggaaattgcccaccacttcaatttgagttcccgtcacatccggcgc
atcatacagcaagaatttggcgtgtcccccatggaacttctattgacccgtcgcttattg
ttagccaagcaacttttatcggaaacgagtctatcaattactgaaatcgccttttccagc
ggattttcaagtttgcgaagattcaatgatgcctttagcaagcgatatggtatgcctcca
agccgtgttcgcaaagggataaaacagcgattcgtaaagccagtaccatccgagacaata
acccttcagcttaactatcgccctccattcgattgggaggctcttttaacatttttaaag
gcccgctcgctcaaaggagtggaatatatttgggatggcaattatgcgcgcacggttcaa
ctcggacaacagcgtggctgggtctgtgtccgccatgcacctgaaaaaaatgccctctat
gtcgaggtttctcaatcgctcttgtctgttcttccagccttgctggggagactgcgcaat
ctatttgacttgagtgcaagaccggactccattgcaactcagctcggacaggatcccttg
ttggcagaggctttgactaaaaatccggggctgcgcgttccaggggcattcgatgggttt
gaattggctgttcgggctgtattgggtcagcagatcacggtaaaggctgccacaacgttt
ggcggacgtgtcgtaaaggcctttggagaatgcattgaaaccccttatccggagttgtat
cgattggctccaacaccgcagcggatggcttctttaagagtcgaagaactgacggcgctt
ggcatcatccaagcgcgcgctaaaacgattatcactttggcagaagagatggcttccaat
cgcttaaaaatcgaggctggtttgcatcctgaagagacgatcaagcaattgattgcactg
cctggaatagggaagtggacggctcattacattgctatgcgagcccttcgatggccagac
gcctttcccaaagaagacattgtgctgcgcaaaaaattaggcggggtatcagcctcgcaa
gcagagattttatctcaagcttggcgtccttggcgcagctacgcgacgctctatctgtgg
ctgctgtaa
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