KEGG   Pseudomonas nanhaiensis: KEM63_00310
Entry
KEM63_00310       CDS       T07673                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
pnn  Pseudomonas nanhaiensis
Pathway
pnn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pnn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KEM63_00310
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pnn03019]
    KEM63_00310
Messenger RNA biogenesis [BR:pnn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     KEM63_00310
SSDB
Motif
Pfam: RNase_J_b_CASP Lactamase_B Lactamase_B_2 RMMBL Anti-Pycsar_Apyc1 Lactamase_B_6
Other DBs
NCBI-ProteinID: UAW98471
LinkDB
Position
complement(67453..68790)
AA seq 445 aa
MPAPRFDQLHRQPGPFFVALGGAGMFGANFYLYGSAGQWIAVDCGFALQSTASGSNIMSV
PSLAALEQHDIQLSAVLITHGHEDHIGAIPHLWRQLNCPLYASPFAAHLIRNKLDPSLQW
PQLKEIRPLEPVGIGHFQAEWIPVTHSIPESHGIVIEAAGKRIYHSGDWKLDPAPVVGGL
TAQSRLQALGRSGVHAVIGDSTNAPVPGMSRSESDVQNGLLDTIRACRKRVIVTCFASNL
ARLHSLAEIAFDTARYAGLLGRSLLTMHSAGRALNYLSPRPGFIGPWELGYLPREQQLWI
CTGSQGEPAAALGRLASGSHPHLSLEEGDTVLFSSRLIPGNEEALERIRRGLTEQGVNII
DDEMAPIHSSGHPPQEDLRRMYGWLKARYLLPVHGEIYHQQAHLDFARSLGMQGMVPANG
DLIDLSAQPARVADMQWGLREVKQN
NT seq 1338 nt   +upstreamnt  +downstreamnt
atgccagcaccccgtttcgatcagcttcaccgtcagcccggcccgttcttcgttgccctg
ggaggcgccggcatgttcggcgcaaacttctacctgtatggttcggcaggccaatggata
gccgtcgactgcgggttcgccctgcagtccaccgccagtggcagcaacatcatgtccgtc
cccagcctggcagcgctcgagcagcatgatattcagctgtcggccgtgttgataacccac
gggcatgaggatcatatcggcgcgataccgcatctgtggcggcagctgaactgccccctc
tacgccagcccgttcgccgcgcacctgatacgcaacaagctcgacccgtccctgcagtgg
ccgcagctcaaggagatccgcccgctcgagcctgttggaatcggccactttcaggccgaa
tggattcccgtgacgcactccattccggagtcccatggcatcgtcatcgaggccgccggc
aagcgcatctaccacagcggcgactggaagctcgatccggcaccggtggtgggcgggctg
acagcgcagagtcgactgcaggcgcttggcagaagcggcgttcacgccgtgatcggtgac
tccaccaacgcgccggtgcccggtatgagtcgctcggaatcggacgtgcagaacggactg
ctcgataccattcgcgcctgccgcaaacgggtcatcgtcacctgttttgccagcaacctg
gcacgcctgcacagtctggcagagatcgccttcgacactgcccgctatgccgggttgctc
ggccgcagcctgctgaccatgcacagcgccggtcgggcactgaactacctgagtcccagg
cccggtttcatcggtccctgggagttgggctatctgccgcgcgagcagcagctctggatc
tgtaccggcagtcagggcgaacccgctgccgcgctgggacgactggccagtggcagccat
ccgcatctgtccctggaagaaggcgataccgtgctgttctcatcgcgactgattccggga
aacgaggaagcgctggagcgtatccggcgcggactgaccgagcagggtgtgaacatcatc
gatgatgaaatggctccgatccattcatccggccatccgccacaggaagacctgcggcga
atgtatggctggctgaaagcgcgatatctcttgcccgtacacggtgaaatctatcatcag
caagcgcatctggacttcgcccggagcctgggcatgcagggcatggtgcccgccaatggc
gacctgatcgacctgtccgcccaaccggcgcgggtggccgacatgcaatggggcctgcgg
gaggtcaaacagaactga

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