Pseudomonas nanhaiensis: KEM63_00310
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Entry
KEM63_00310 CDS
T07673
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pnn
Pseudomonas nanhaiensis
Pathway
pnn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KEM63_00310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnn03019
]
KEM63_00310
Messenger RNA biogenesis [BR:
pnn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KEM63_00310
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Paralog
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
UAW98471
LinkDB
All DBs
Position
complement(67453..68790)
Genome browser
AA seq
445 aa
AA seq
DB search
MPAPRFDQLHRQPGPFFVALGGAGMFGANFYLYGSAGQWIAVDCGFALQSTASGSNIMSV
PSLAALEQHDIQLSAVLITHGHEDHIGAIPHLWRQLNCPLYASPFAAHLIRNKLDPSLQW
PQLKEIRPLEPVGIGHFQAEWIPVTHSIPESHGIVIEAAGKRIYHSGDWKLDPAPVVGGL
TAQSRLQALGRSGVHAVIGDSTNAPVPGMSRSESDVQNGLLDTIRACRKRVIVTCFASNL
ARLHSLAEIAFDTARYAGLLGRSLLTMHSAGRALNYLSPRPGFIGPWELGYLPREQQLWI
CTGSQGEPAAALGRLASGSHPHLSLEEGDTVLFSSRLIPGNEEALERIRRGLTEQGVNII
DDEMAPIHSSGHPPQEDLRRMYGWLKARYLLPVHGEIYHQQAHLDFARSLGMQGMVPANG
DLIDLSAQPARVADMQWGLREVKQN
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgccagcaccccgtttcgatcagcttcaccgtcagcccggcccgttcttcgttgccctg
ggaggcgccggcatgttcggcgcaaacttctacctgtatggttcggcaggccaatggata
gccgtcgactgcgggttcgccctgcagtccaccgccagtggcagcaacatcatgtccgtc
cccagcctggcagcgctcgagcagcatgatattcagctgtcggccgtgttgataacccac
gggcatgaggatcatatcggcgcgataccgcatctgtggcggcagctgaactgccccctc
tacgccagcccgttcgccgcgcacctgatacgcaacaagctcgacccgtccctgcagtgg
ccgcagctcaaggagatccgcccgctcgagcctgttggaatcggccactttcaggccgaa
tggattcccgtgacgcactccattccggagtcccatggcatcgtcatcgaggccgccggc
aagcgcatctaccacagcggcgactggaagctcgatccggcaccggtggtgggcgggctg
acagcgcagagtcgactgcaggcgcttggcagaagcggcgttcacgccgtgatcggtgac
tccaccaacgcgccggtgcccggtatgagtcgctcggaatcggacgtgcagaacggactg
ctcgataccattcgcgcctgccgcaaacgggtcatcgtcacctgttttgccagcaacctg
gcacgcctgcacagtctggcagagatcgccttcgacactgcccgctatgccgggttgctc
ggccgcagcctgctgaccatgcacagcgccggtcgggcactgaactacctgagtcccagg
cccggtttcatcggtccctgggagttgggctatctgccgcgcgagcagcagctctggatc
tgtaccggcagtcagggcgaacccgctgccgcgctgggacgactggccagtggcagccat
ccgcatctgtccctggaagaaggcgataccgtgctgttctcatcgcgactgattccggga
aacgaggaagcgctggagcgtatccggcgcggactgaccgagcagggtgtgaacatcatc
gatgatgaaatggctccgatccattcatccggccatccgccacaggaagacctgcggcga
atgtatggctggctgaaagcgcgatatctcttgcccgtacacggtgaaatctatcatcag
caagcgcatctggacttcgcccggagcctgggcatgcagggcatggtgcccgccaatggc
gacctgatcgacctgtccgcccaaccggcgcgggtggccgacatgcaatggggcctgcgg
gaggtcaaacagaactga
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