KEGG   Pseudomonas nanhaiensis: KEM63_00985
Entry
KEM63_00985       CDS       T07673                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
pnn  Pseudomonas nanhaiensis
Pathway
pnn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pnn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KEM63_00985 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pnn03021]
    KEM63_00985 (rho)
   03019 Messenger RNA biogenesis [BR:pnn03019]
    KEM63_00985 (rho)
Transcription machinery [BR:pnn03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     KEM63_00985 (rho)
Messenger RNA biogenesis [BR:pnn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     KEM63_00985 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_25 NACHT S1CSD-TOTE-2 AAA_22 AAA
Other DBs
NCBI-ProteinID: UAW98595
LinkDB
Position
complement(219415..220680)
AA seq 421 aa
MNLTELKQKPITELLEIADQMGLENMGRSRKQDVIFAILKKHAKGGEDIHGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKDGERYFALLKVDSIN
FDRPENTKNKILFENLTPLFPDDRLVMEAGNGATEDLMARIIDLCAPIGKGQRGLLVAPP
KAGKTLMLQNIASNIARNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPSRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEIHLDRKIAEKRTFPAINI
NRSGTRREELLTSEDELQRMWILRKILHSMDEIAAIEFLLDRLKDTKTNDEFFQSMKRSK
N
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaacctgaccgaactcaagcaaaaacccattaccgaactgttggaaatcgccgatcag
atgggcctggagaacatgggccgatcgcgtaagcaggatgtgattttcgccatcctcaag
aaacacgccaaaggcggcgaggacatccacggcgatggcgtcctggaaattcttcaggat
ggttttggttttctccgctcggctgattcgtcctacctcgccggccccgatgacatctac
gtgtcgcccagtcagatccgccgcttcaacctgcgtacgggcgataccatctccggcaag
attcgacccccgaaggatggcgaacgctactttgcgctgctgaaggtcgactcgatcaac
ttcgaccgtccggaaaacaccaagaacaagatcctgttcgagaacctcacgccgctgttc
ccggatgatcgtctggtcatggaagccggcaacggcgctaccgaggatctgatggcgcgg
atcatcgatctgtgcgcgccaatcggcaagggccagcgcggcctgctcgtggcaccgccg
aaggccggcaagacgcttatgctgcagaacatcgcatcgaacatcgcgcgtaacaatccc
gagtgtcatctgatcgttctgctgatcgacgagcgtccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctcaaccttcgacgagccgccgagccgccacgtt
caggttgccgagatggtcatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
atcattcttctcgactccatcacccgcctggcgcgcgcctacaacacggttatcccgagt
tccggcaaggtactgaccggcggtgtcgacgcgcacgcgctggaaaagcccaagcgcttc
tttggtgcggctcggaacatcgaggaaggcggcagcctgaccatcatcgccaccgcgctg
gtcgataccggttcgaagatggacgaggtgatctacgaggaattcaagggcaccggcaac
atggagatccacctggatcgcaagatcgccgagaagcgtacgttcccggcaatcaacatc
aaccgctccggtacccgccgcgaagaattgctgaccagcgaagacgagcttcagcgcatg
tggattctgcgcaagatcctccattccatggacgaaattgccgccatcgaattcctgctc
gaccgtctgaaggacaccaagaccaacgacgaattcttccagtcgatgaagcgcagcaaa
aactaa

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