Halopseudomonas nanhaiensis: KEM63_01855
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Entry
KEM63_01855 CDS
T07673
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pnn
Halopseudomonas nanhaiensis
Pathway
pnn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pnn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KEM63_01855 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnn03021
]
KEM63_01855 (rpoD)
Transcription machinery [BR:
pnn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KEM63_01855 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
UAW98755
LinkDB
All DBs
Position
complement(416461..418314)
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AA seq
617 aa
AA seq
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MSGKAQQQSRLKELIARGREQGFLTYAEVNDHLPEDISDPEQVEDIIRMINDMGITVFET
APDADALLLADNDADEAAAEEAAAALAAVESDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMAAISMFPGTVDSILADYHRVVDEGGRLSDVFSGYIDPDDDGMSAPGA
SEVPAQPVKPKAEEKSDDDEDDSDDDSTEEEGDGGPDPEVARQRFGAIEDQLTKTKKALK
KHGRGSPQATEELAALALLFMPIKLIPKQYEALVTRVRGSQDAIRAQERSIMQLCVRDAR
MPRADFLRSFPGNEVNEAWVDSLLADGPRYAEALEAIKPEIIRAQKKLAAMESDFDLTIS
EVKDINRRMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR
EPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMESPIDSAT
VESLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPTRSDHLRSFLDE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcaatcccgtctcaaggagctaatcgctcgcggtcgcgag
cagggcttcttgacctatgcggaggtcaacgaccatctgccggaggatatatcggatccg
gaacaggttgaagacatcatccgcatgatcaacgacatggggatcacggttttcgagacc
gctcccgatgccgatgccctgttgctggctgacaacgacgctgacgaggctgcggctgaa
gaagctgcggctgcgctggctgcggtcgaaagcgatatcggccgtaccactgatcctgtg
cgcatgtacatgcgcgagatgggtaccgtggaactgctcactcgcgaaggcgaaatcgaa
atcgccaagcgcatcgaggaaggcatccgcgaagtcatggctgccatctccatgttcccc
ggcaccgttgacagcattcttgccgactaccaccgcgtcgtcgacgagggcggccgcctg
tcggacgtgttcagcggctacatcgatcctgatgacgatggcatgtccgcccccggcgcc
agcgaagtccccgcacagccggtgaagcccaaggctgaagaaaaatcggacgacgacgag
gatgacagcgacgacgattcgaccgaagaggaaggcgatggcggtccggatccggaagtt
gcccgccagcgcttcggtgccatcgaagatcagctgaccaagaccaagaaggcgctgaag
aagcatggtcggggcagcccgcaggccaccgaagagcttgctgcgctcgcgctcttgttc
atgccgatcaagcttattcccaagcagtacgaggcactggtgacccgtgtacgcggctcg
caggacgccattcgtgcccaggaacgttcgatcatgcagctgtgcgtgcgcgacgcacgt
atgccgcgcgccgactttctacgcagcttccccggcaacgaagtcaacgaagcctgggtc
gattcgctgctggccgacggcccgcgttacgccgaagcactcgaggcgatcaaacccgaa
atcatccgcgcgcagaagaagctcgccgcgatggagtcggatttcgatctgaccatttcc
gaggtcaaggacatcaatcgccggatgtcgatcggcgaagcacgcgcccgccgcgccaag
aaggaaatggttgaagccaaccttcgtctggttatctcgatcgccaagaagtacaccaac
cgcggcctgcaattcctggatctgattcaggaaggcaacatcggtttgatgaaggcggtg
gacaagttcgaataccgccgcggctacaagttctcgacctacgcaacctggtggatccgt
caggcgatcactcgctcgatcgccgaccaagcgcgcaccattcgtattccggtgcacatg
atcgaaacgatcaacaagctcaaccgcatttcccgacagatgttgcaggaaatgggaaga
gagccgacgcctgaagagctgggcgagcgcatggaaatgcccgaggacaagatccgcaag
gtactgaagatcgccaaggagccgatctccatggaaacgccgatcggtgacgacgaagac
tcgcatctgggcgacttcatcgaggattcgaccatggaatcgccgatcgactcggctacc
gtggaaagcctaaaggaagccacccgcgaagtgctttcggggcttaccgcaagggaagcc
aaggtattgcgcatgcgtttcggcatcgacatgaataccgatcatacgctggaagaggtc
ggcaagcagttcgatgtaacccgcgagcggattcgtcagatcgaggccaaggcattgcgc
aagctgcgccatccgacgcgcagcgatcatctgcgaagcttcctcgacgagtaa
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