Halopseudomonas nanhaiensis: KEM63_02035
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Entry
KEM63_02035 CDS
T07673
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pnn
Halopseudomonas nanhaiensis
Pathway
pnn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KEM63_02035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnn03019
]
KEM63_02035
Enzymes [BR:
pnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KEM63_02035
Messenger RNA biogenesis [BR:
pnn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KEM63_02035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
SUa-2TM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UAW98791
LinkDB
All DBs
Position
complement(453053..454531)
Genome browser
AA seq
492 aa
AA seq
DB search
MSFASLGLSDALVRAVAATGYTTPTPVQAQAVPAVLEGRDLMVAAQTGTGKTAGFSLPIL
EKLFPNGQADATYRRTPKQIRVLVLTPTRELAAQVHASILAYGKELPLKSACVFGGVGPN
PQIRAIAPGLDILVACPGRLLDLVGQRAVDLSKVETLVLDEADRMLDMGFIHDVKKVIAK
LPTKRQSLLFSATFSKEITELANRLLDNPARIEVTPPNTTVERIAQKVYRVPSGHKRALV
AHLITQGAWEQVLVFTRTKHGANRLAEYLDKNGLSAAAIHGNKSQNARTKALADFKANEL
RVLVATDIAARGLDIDQLPHVVNFELPNVSEDYVHRIGRTGRAGRSGEAVSLVSPDEEKL
LKAIERMTRQRIDEGTLDGFEAPAQAELNSDRPERPRGAQPSGRGQRNGSANANSKGATG
GQNTARGNQPRPARNRSEPRAARPANEPFDRVAEERRLQANGNKAAPASTPRPNGRSNNR
PQREKPALFSPR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttctctcggcctgtccgacgcgctggtgcgcgccgtggcagccactggc
tataccactcctacccccgttcaggcacaggccgtaccggccgtcctggaaggtcgcgac
ctgatggtcgccgcgcagaccggcaccggcaagaccgctggcttctctctgcccattctg
gaaaaactgtttcccaacggccaggctgatgcgacctatcgccgcactcccaagcagatt
cgcgttctggtgctgacacccacccgcgaactcgccgcacaggtgcacgccagcatcctg
gcctatggcaaggaactcccgctgaaaagcgcctgcgtctttggcggcgtgggcccgaat
ccgcagatccgcgccattgcaccggggctggatattcttgtggcgtgcccgggtcgcctg
ctggatctggtcggccagcgtgccgtcgacctgtcgaaggttgaaacactggtgctcgac
gaagccgaccgcatgctcgacatgggcttcattcacgacgtgaagaaggtgatcgcgaag
ctgccgaccaaacgtcagagcctgctgttctcggcgacattctccaaagagatcaccgag
ctggccaaccgtctgctcgacaatccggcgcgcatcgaagtcacgccgccgaacaccacc
gtcgaacgcatcgcgcagaaggtttaccgcgtaccgtccggccacaagcgtgcgctggtg
gcccacctgattacccagggtgcctgggaacaggttctggtgtttacccgcaccaagcac
ggcgccaaccgcctggccgagtacctcgacaagaacggcctgtctgccgctgcgattcac
ggcaacaagagccagaatgcccgcaccaaggccctggccgacttcaaggcaaacgagctt
cgcgtactggtggctaccgatatcgccgcgcgcggcctggacatcgatcagctgccgcac
gtggtcaacttcgagctgccgaacgtgtcggaagactacgtgcaccgcatcggtcgtacc
ggccgtgcgggccgcagcggcgaagcggtgtcgctggtcagcccggacgaggaaaagctg
ctcaaggctatcgaacgcatgacccgccagcgcattgacgaaggcacgctcgacggcttc
gaagcgccggcgcaagccgagctgaacagcgatcgtccggagcgcccgcgaggcgcccag
cccagcggccgcggtcagcgcaacgggagcgccaatgccaacagcaaaggcgcaacgggc
ggccagaacacagcccgcggcaatcagccccgtccggcgcgcaaccgcagcgagccacgg
gcagcccgcccggcgaacgagcccttcgatcgtgtagctgaagagcgccgcttgcaggcc
aacggcaacaaggccgcgcctgccagcacgccacgtcccaatggccgctccaacaaccgg
ccacagcgggaaaaaccagcactgttcagcccacgctga
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