Halopseudomonas nanhaiensis: KEM63_04335
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Entry
KEM63_04335 CDS
T07673
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pnn
Halopseudomonas nanhaiensis
Brite
KEGG Orthology (KO) [BR:
pnn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnn03019
]
KEM63_04335 (hrpB)
Enzymes [BR:
pnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KEM63_04335 (hrpB)
Messenger RNA biogenesis [BR:
pnn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KEM63_04335 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
ResIII
HA2_C
AAA_22
AAA_30
AAA_19
AAA_25
Motif
Other DBs
NCBI-ProteinID:
UAW99206
LinkDB
All DBs
Position
968218..970758
Genome browser
AA seq
846 aa
AA seq
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MWLDQTLPVSEVLPELDQLLGAGPAAVLVAPPGAGKTTLVPLALLDSAWLGEQKIIMLEP
RRLAARAAAERLAQLLGEAVGETVGYRIRLESRVGPRTRIEVVTEGILHRLLQQDPELPG
VGLVIFDEFHERSLDADLGLALCLQTQQYLREEPPLRLLVMSATLNAEPISRLLGHAPIV
SSEGRQYPVEVRYGAPAHPNASPDQQVLGGIHEALDREQGNILVFLPGTAEIRRIQAALE
QSREELARVVVAPLYGDLDLAAQRRAIAPPAAGMRKVVLATSIAETSLTIEGIRVVIDAG
LARQAAFDPVSGMTRLHTRRVSRTAAEQRAGRAGRIAPGVCYRLWSAGQHEQLASHSQPE
ILQADLAPLALQLAQWGIQQATELAWLDPPPAAALQQGRELLERLGALQREGDAWRLTAH
GEQMAALPMHPRLAHMLLRGAELGLLRTASRLAALLGERDVLRADSADISRRLDAFDDPR
GEAAVDRAALARVRQLAEQWSGLLKGRPTGAAVANPRDTAWAGILLAMAYPDRIAQRRDN
GQDYRLANGKSAGFARPDYLQGEAWLAIAALGGHVNQRSASIYIAAALDATLLERHLPEV
FRETDTLEWDPRSESLVAERQRRIGEVIYSREPLQQIDPQRRAIALCEVVRRQGLALLPW
TPALRQWQARIMLLREMDLLSGNTSEWPDVSDQQLLATLEKWLAPFLVPVTRLAHFAALD
LNAILASLLPWPLPARLDELAPTHWTVPTGSRIRIDYGETPPVLAVRLQEMFGSRQSPRI
AGGRVALKLHLLSPAQRPLQVTQDLEGFWQGSYHDVKKDMKGRYPKHYWPDDPLQAEPTA
RAKPRK
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
gtgtggttagatcagacattgccggtctccgaggtgctgcccgagcttgaccagctgctc
ggggcagggcccgctgcggtactggtcgcgccgcccggcgccggcaagacgaccctcgtt
ccgctggcgctgctcgatagcgcatggctgggcgagcagaagatcatcatgctcgagccg
cgccggctagcggcgcgtgcggcggcggagcgtctggcacagctgctcggtgaggcagtg
ggcgaaacggtcggctaccgcatacgccttgagtccagagtcggcccccggacgcgaatt
gaagtggtgaccgaagggatactccatcgtctgcttcagcaggatccggagctgcctggc
gtcggtctggtcattttcgatgaatttcatgaacgcagcctggatgccgatctgggcctg
gccctgtgtctgcaaacccagcagtatctgcgtgaggagcctccgctcaggttgctggtg
atgtctgcgacgctcaatgccgaaccgataagtcggctgcttggacatgcgccgatcgtc
agtagtgaaggccggcagtacccggtggaggtacgctacggcgcaccggcacacccgaac
gcctcacctgatcagcaggtgctgggcgggatccatgaagcgctggaccgggagcagggc
aacattctggtgtttctcccgggcacagcagagatccgacggattcaggcagcactggaa
cagagccgggaggagctcgcgagggtggtggtggctccgctgtacggcgatctggacctt
gccgcacagcgtcgtgccatcgccccgccggcagccggcatgcgcaaggtggtgttggcg
accagtattgccgagaccagtcttaccatcgaaggcattcgtgtggtcatcgatgcgggg
ctggcacgccaggcggccttcgatccggtctcaggcatgacacgtctgcatacgcgccgc
gtttcccgtaccgccgccgagcagcgcgcgggtcgcgccggccgcatcgccccgggggtc
tgctatcgactctggtcggccggtcagcacgagcagctggcgagccactcccagcccgaa
atactccaggcggacctggcgccgctggcgctgcagctggcgcagtggggaattcaacag
gcaaccgaactggcctggctcgatccgcctccagcggctgcgttgcagcagggccgcgaa
ctgctcgagcggctgggggcgctgcagcgcgagggcgacgcttggcgactgaccgcacat
ggcgagcagatggccgcactaccgatgcatccgcggcttgcccacatgcttttgcgtggg
gccgagctgggcctgttgcggacagcatcgcgcctggccgcgctactcggcgagcgcgac
gtgttgcgtgccgactcggccgacatcagccggcggctggatgcattcgacgacccgcga
ggggaggccgcagtcgaccgcgcggcgctggcgcgtgtgcgtcagcttgctgagcaatgg
tccgggctattgaaggggcggccgaccggggctgccgtagccaatccacgcgataccgcc
tgggccggcattctgttggcgatggcctatcccgatcgcatcgcgcaacgacgcgacaat
ggccaggactaccgtctggccaatggcaagtcggccggttttgccagacccgactatctg
cagggcgaggcgtggctggcgatcgccgccctgggcgggcatgtcaaccagcgcagcgcc
agcatctacattgcggcggcgctcgatgccacgttgctcgagcgccatctgccagaggtt
ttccgtgagaccgatacgctggagtgggacccgcgcagcgagagccttgtcgccgagcgg
cagcggcggatcggtgaagtgatctacagccgggaaccgctgcagcagattgatccgcag
cgtcgcgcaatcgccctgtgcgaagtcgtgcgccgtcaggggcttgccctgctgccctgg
acgccggcactgcgtcagtggcaggccagaatcatgctgttgcgcgagatggacctgttg
agcggaaacaccagcgaatggccggacgtgtccgaccagcaattgctcgcaacgctcgag
aaatggctcgcgccgttcctcgtcccggtgaccagactcgcgcacttcgccgcgctggat
ctgaacgccattctggcctcgctgctgccctggccgcttccggccaggcttgacgaactg
gcgccgacccactggaccgtaccgaccgggtcccgaatccgtatcgactacggcgaaacg
ccgcccgtacttgccgtgcggctgcaggagatgttcggtagccggcaatcgccgcgcatt
gctggagggcgggttgcgctcaaactgcacctgctgtccccggcccagcgcccgctgcag
gtgacccaggatctcgaaggcttctggcagggcagttatcacgacgtgaaaaaggacatg
aagggtcgctatcccaaacactactggccggatgacccattgcaggcagagccgaccgcc
cgggccaagccccgcaagtag
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