Halopseudomonas nanhaiensis: KEM63_09485
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Entry
KEM63_09485 CDS
T07673
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pnn
Halopseudomonas nanhaiensis
Pathway
pnn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KEM63_09485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnn03019
]
KEM63_09485
03009 Ribosome biogenesis [BR:
pnn03009
]
KEM63_09485
Enzymes [BR:
pnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KEM63_09485
Messenger RNA biogenesis [BR:
pnn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KEM63_09485
Ribosome biogenesis [BR:
pnn03009
]
Prokaryotic type
rRNA helicases
KEM63_09485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UAW97067
LinkDB
All DBs
Position
2112255..2113958
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AA seq
567 aa
AA seq
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MSDTAPAAVHFADLGLPAPLLQALSSLGYETPSPIQAEAIPTLLAGQDLLGLAQTGTGKT
AAFALPVLAGIDVSLRATQALILTPTRELALQVAEALQRYAQNMRGFSVLALYGGSAFAP
QFKALERGAHVVVATPGRLTDHMRRGSIKFDSMRFLVLDEADEMLKMGFADDLDAVFEKV
PEATQKALFSATMPAGVRTVARKHMRDPKEIRLHSGVSSSLDTITQKVWEVSNHHKLDAM
TRLLEVEPVEAMIVFVRTKTASLELAERLEARGFAAAALNGDLSQQLREQVVDRLKRGLL
DIVVATDVAARGLDVERISHVLNYDLPHDSESYVHRIGRTGRAGRSGTAILFATPRERRL
LHVLEKATGQKIQPQALPSADAVRSGRLSKLAARLNSARENTGALHQQLVRDLLELTNMD
PEELVAALLSVLPGAKTLVEPVADLPAAPPRREGADDRDSGLVRYKVQGGRANNLMPKPL
VDALVKHGRLQRQQIGHIKMFTEHTGVYLPQLDDATLGRLADVEINGVALQIRSWPAPPG
ESDRPPRRAPRKDFAGKPKPAPKPRQG
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgtccgataccgctccggcggcagtgcatttcgccgatctcggcttgcctgcaccgctc
ctccaggctttgagcagcctgggctatgaaacaccttctccgattcaggcagaggcgatt
ccgactctgctggctgggcaggatctgctgggtctggctcagaccggcaccggcaagaca
gccgcctttgccttgccggttctggccggcatcgacgtcagcttgcgcgccacgcaggct
ttgatcctgactcccacgcgggagctcgcactgcaggtagccgaagcactgcagcgctat
gcgcagaacatgcgcggtttctccgtgctggcgctgtacggcggctcggctttcgcgccg
caattcaaggcgctcgagcgtggagcccatgttgtcgtcgctacgccgggtcgtctgacc
gaccacatgcgccgcggcagcatcaaattcgattcgatgcgcttcctggtgctcgacgaa
gctgacgaaatgctcaagatgggcttcgccgatgatctcgacgccgtcttcgaaaaggtt
ccggaagccacccagaaggcactgttctccgcaaccatgccggccggcgtgcgcaccgtg
gcgcgcaagcacatgcgcgaccccaaggaaattcgcctgcacagcggcgtgagcagcagt
ctggacaccatcacccagaaggtctgggaagtgtccaatcatcacaagctcgatgccatg
acccgcctgctcgaagtcgagccggtcgaggcgatgatcgtattcgtccgcaccaagacg
gctagtcttgagctggcagagcgtctcgaggcgcgcggcttcgctgctgctgcgctcaat
ggcgaccttagccagcaactgcgtgagcaggtggtcgaccgcctcaagcgagggttgctg
gacatcgttgtggccaccgacgtggcggcccgcggcctggacgtcgagcgtatttcgcac
gtgttgaactatgatctgccgcacgacagcgagtcctacgttcaccgtatcggtcgtacc
ggccgggccggccgctcgggcaccgcgatcctgttcgccaccccgcgtgagcgccgtctt
ctgcacgtgctggagaaagccaccggtcagaagatccagccgcaggccctgcccagtgcc
gatgccgttcgcagcggtcgactcagcaagctggctgcacgcctgaacagcgcgcgagaa
aataccggcgcgctgcatcagcaactggttcgcgatctgctggaactgaccaacatggat
ccggaagaactggttgccgcgttgctgagcgtgttgccaggcgccaaaacactcgtcgag
ccggtggcagatctgcctgccgcgccgccgcgccgcgaaggtgcagatgatcgcgattcc
ggtctggtccgttacaaggttcagggtggccgcgcaaacaatctgatgcccaagccgctg
gttgatgcgctggtcaagcatggtcggcttcagcgccagcagatcggtcacatcaagatg
tttaccgagcacaccggcgtgtatctgccgcagctggacgacgccacactgggtcgcctg
gctgatgtggagatcaacggcgtagcgctgcagatccgctcctggccggcaccgcccggc
gagagcgatcgcccgccgcgccgcgcaccgcgcaaggatttcgccggcaaaccgaaacct
gcgccaaagccccgccagggctga
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