Halopseudomonas nanhaiensis: KEM63_12780
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Entry
KEM63_12780 CDS
T07673
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pnn
Halopseudomonas nanhaiensis
Pathway
pnn03030
DNA replication
pnn03430
Mismatch repair
pnn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pnn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KEM63_12780 (dnaE)
03430 Mismatch repair
KEM63_12780 (dnaE)
03440 Homologous recombination
KEM63_12780 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pnn03032
]
KEM63_12780 (dnaE)
03400 DNA repair and recombination proteins [BR:
pnn03400
]
KEM63_12780 (dnaE)
Enzymes [BR:
pnn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KEM63_12780 (dnaE)
DNA replication proteins [BR:
pnn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KEM63_12780 (dnaE)
DNA repair and recombination proteins [BR:
pnn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KEM63_12780 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
UAW97666
LinkDB
All DBs
Position
complement(2822027..2825551)
Genome browser
AA seq
1174 aa
AA seq
DB search
MTVSFVHLRVHSEYSLVDGLVKIKPLIKATADAGMPAVAVTDQNNMCSLVKFYKAAMGGG
IKPISGVDIWLVGRDDDTQLTRMTLLSMNKRGYRNLTELISRGYTEGQRNGVVTIRREWV
AEASEGVIALSGAKEGEIGQALLSNNPHEADALIEYWLGVFPDRFYLELQRTSRPHDEEY
LHSAVTLAARFDCPVVATNDVRFLKREDFEAHETRVCIGEGRALDDPRRVRQYSEEQYLK
TPAEMAELFADIPEALENSVEIARRCSIEVQLGTYFLPEFPIPEGLTIEEYFKQVSFEGL
EQRLKIILPPDSPDYESRRKVYVDRLNFELDIINQMGFPGYFLIVMDFIKWAKGNGVPVG
PGRGSGAGSLVAYSLLITDLDPLAYDLLFERFLNPERVSMPDFDIDFCMEGRDRVIDYVA
EAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPFEVGMTLAKAHEQEE
LLREFLAVDEEAQEIWDMARKLEGITRNVGKHAGGVVIAPTKLTDFAPLYCDEAGAGLVT
QFDKDDVEAAGLVKFDFLGLRTLTIIDWAMDTINREQAKKGLDPLNIDFIPLDDAPTYQM
LQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRE
IVSYPHPNYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEE
MAKQRAIFLEGCQNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHHP
APFMAAVLSADMHNTDKVVTLIEECRSMKLRIKAPDVNVSEFKFTVDDAGDVVYGLGAIK
GVGEGPVETIVETRQAGGPFNDLFDFCARVDLKRINKRVMEALIRSGALDRLGPFFDEEQ
QAYLKQVDRNRAALAAAMEEAMASAEQTARSADSGHDDLFGDLLGPSTDRDVFESYRRVR
EWSFKERLRGEKETLGLYLTGHPIDEYEKEIRRFARQRIIDLKPSREGQTIAGLVFDLRV
MKSKRGDKVGFVTLDDRSARIEVSLFADAFQAAQSLLQKDALLVVEGEVAQDDFSGGLRM
RAKRVMSLEEARTSLLDSVRISMDTVRHGPDCLAQIAGLLRKHRGGCAVTIDVTRPDATA
LLRLGEEWRVEPADELVQSLRDQLGKDSVSLHYR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtctccttcgtccatctgcgcgttcacagtgagtattccctggtcgacgggctg
gttaagatcaagccgctgatcaaggcgactgccgatgccggcatgccggctgttgcggta
accgatcagaacaacatgtgcagcctggtcaagttctacaaggcggccatgggtggcggc
atcaagccgatttcgggcgtcgacatctggctggtgggccgggacgacgatacccagctg
actcgcatgaccctgctgtcaatgaacaagcggggctatcgcaaccttaccgagctgatt
tctcgcggttataccgaaggccagcgcaacggtgtggtcaccatccgccgcgagtgggtc
gccgaagccagtgaaggtgtcattgccctgtcgggagccaaggagggcgagattggccag
gcgctgctgtcgaacaatccgcacgaagcggacgcgctgatcgaatactggctgggtgtg
tttccggaccggttctatctggagttgcagcgcaccagtcgcccgcatgacgaagagtac
ctgcactctgcagtcacactggccgcgcgcttcgactgtccggtcgtcgccaccaacgac
gtgcgctttctcaagcgcgaggatttcgaggcgcacgagacgcgcgtatgcatcggtgag
ggccgcgcccttgacgacccgaggcgggtgcgccagtacagcgaagagcagtatctgaaa
accccggcggaaatggctgagctgtttgccgatatccccgaggcactggaaaactcggtc
gaaatcgcccgacggtgcagcatcgaggtgcagctgggcacgtacttcctgccggagttt
ccgattccggaaggtctgaccattgaagagtatttcaaacaggtgtcctttgaaggcctt
gagcagcgcctgaagatcatcctgccgcccgattcgccggactacgaatccaggcgtaag
gtgtacgtcgatcgcctgaatttcgagctcgatatcatcaatcagatgggcttccccggc
tacttcctgatcgtcatggacttcatcaaatgggccaagggtaacggcgtgccggtgggt
ccgggccgggggtcaggtgccggctcactggtcgcctattcgctgctgatcaccgatctt
gatccgctggcctacgacctgctgttcgagcgcttcctcaatccggaacgggtatcgatg
cccgacttcgatatcgacttctgcatggaaggccgcgaccgggtgatcgactacgtcgcg
gaagcctacgggcgcaacgcggtatcgcagatcatcaccttcggcaccatggcggccaag
gctgtggtacgtgacgtcgcgcgcgtgcagggcaagtcctacggtctggcggacaagctg
tcgaagatgatccccttcgaagtgggcatgacgctcgccaaggcccatgagcaggaagag
ctgctgcgcgaattccttgccgtcgacgaggaagcccaggaaatctgggacatggcgcgc
aagctcgaaggtattacgcgtaacgtcggcaaacacgccggtggggtggtgatcgcgccg
accaagctgaccgatttcgcgccgctgtattgcgacgaagccggtgccggcctggtgacc
cagttcgacaaggacgacgtcgaggcggcaggcctggtgaagttcgacttcctcggcctg
cgtacgctgacgatcatcgattgggccatggatacgatcaaccgcgagcaggccaagaag
ggcctggatccgttgaatatcgacttcattccgctggatgacgcgcccacgtatcaaatg
ctgcagagagcagaaaccacagcggtcttccagctcgaatcgcgtgggatgaaggagctg
atcaagaagctcaagccggactgcctggaagacctgattgcactggttgccctgttccgc
ccggggccgctgcagtcgggcatggttgacgacttcatcaaccgcaagcacggacgcgag
atcgtctcctacccgcacccgaattatcagtatgcaggccttgagccggtgctcaagccc
acctacggcattatcctgtatcaggaacaggtcatgcagatcgcccaggtgatggccggc
tacacgctcggcggggcggacatgctgcgccgcgccatgggtaagaagaagcccgaagag
atggccaagcagcgggcgatcttcctcgagggctgtcagaacaacgggatcgatgccgat
ctggcgggcaatatcttcgatctggtagaaaaattcgccggctacggcttcaacaagtcg
cactcggccgcctatggtctggtgtcataccagaccgcctggctcaaggcgcatcatcct
gcacccttcatggcagcggtactgtctgccgacatgcacaacaccgacaaggtggtgacg
ctcatcgaagagtgtcgcagcatgaaactgcgcatcaaggcgccggatgtgaacgtgtca
gagttcaagttcaccgtcgatgacgccggggacgtggtctatggcctgggtgcgatcaag
ggcgttggcgaaggcccggtggagaccattgtcgagacgcggcaggcgggtggacctttc
aacgacctgttcgacttctgtgcccgggtcgatctcaagcggatcaacaagcgggtgatg
gaggcgctgatccgcagtggcgcgctggatcgcctgggacccttcttcgacgaagagcag
caggcgtatctcaagcaggtcgatcgcaaccgtgcagcgctcgctgctgcaatggaggag
gcgatggcctcggccgagcagaccgcgcgcagcgccgacagcggccacgatgacctgttt
ggcgatctgctcggcccctcgactgaccgtgatgtgttcgaaagctaccgccgggtgcgc
gaatggtccttcaaggaacggttgcgcggcgagaaggaaaccctggggctatacctgacc
ggccacccgatcgacgagtacgaaaaggagatccgccgcttcgccaggcaacgcatcatc
gatctgaagccgtcgcgcgagggccagacgatcgccgggctggtattcgacctgcgggta
atgaaaagcaaacgcggcgacaaggtgggtttcgtcaccctcgatgatcgatcggcgcgg
atagaggtctcactattcgccgatgcgtttcaggccgcgcagagtcttctccagaaggac
gcgttgctggtggtcgaaggagaggtggcgcaggatgacttttccggcggactgcgcatg
cgtgccaaacgggtcatgagcctcgaggaggcacgtaccagcctgctcgacagcgtacgg
atcagtatggacaccgttcgccatggtccggactgcctggcgcagatcgccgggctgctg
cgcaagcatcgcggcgggtgcgcggttacgatcgacgtgacgcgcccggatgcgaccgcg
ctgctgcgtcttggcgaggaatggcgcgtggagccggctgatgagctggtccagagtctg
cgtgaccagctcggcaaagacagcgtctccttgcactacagatga
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