KEGG   Parastagonospora nodorum: SNOG_03677
Entry
SNOG_03677        CDS       T01161                                 
Name
(RefSeq) hypothetical protein
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
pno  Parastagonospora nodorum
Pathway
pno03018  RNA degradation
pno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SNOG_03677
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SNOG_03677
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pno03019]
    SNOG_03677
   03041 Spliceosome [BR:pno03041]
    SNOG_03677
Messenger RNA biogenesis [BR:pno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     SNOG_03677
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     SNOG_03677
Spliceosome [BR:pno03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    SNOG_03677
SSDB
Motif
Pfam: LSM SM-ATX VWA_3_C CooT RimP_C LSM12_LSM Glyoxalase_7
Other DBs
NCBI-GeneID: 5971094
NCBI-ProteinID: XP_001794231
UniProt: A0A7U2EX04
LinkDB
Position
Unknown
AA seq 86 aa
MATENLLPLELIDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLEEVTEIDPAEGNVKL
PKILLNGNNICMMVPGGDGQTVLEDE
NT seq 261 nt   +upstreamnt  +downstreamnt
atggcaacagagaaccttctccccctcgaactcatcgacaaatgtgttggatcgcaaata
tgggtcattatgaacggcggaaaggaattcaccggcaaacttgtaggatttgatgactac
gtcaacatggttctcgaagaggtgaccgagatcgaccctgcggagggtaacgtgaagttg
ccgaaaatcctcctcaacggcaacaacatctgcatgatggtaccaggcggagacggacag
acggttctggaggacgagtaa

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