Parastagonospora nodorum: SNOG_03677
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Entry
SNOG_03677 CDS
T01161
Name
(RefSeq) hypothetical protein
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
pno
Parastagonospora nodorum
Pathway
pno03018
RNA degradation
pno03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pno00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SNOG_03677
09123 Folding, sorting and degradation
03018 RNA degradation
SNOG_03677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pno03019
]
SNOG_03677
03041 Spliceosome [BR:
pno03041
]
SNOG_03677
Messenger RNA biogenesis [BR:
pno03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SNOG_03677
mRNA degradation factors
5'-3' decay
Lsm complex
SNOG_03677
Spliceosome [BR:
pno03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
SNOG_03677
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
VWA_3_C
CooT
RimP_C
LSM12_LSM
Glyoxalase_7
Motif
Other DBs
NCBI-GeneID:
5971094
NCBI-ProteinID:
XP_001794231
UniProt:
A0A7U2EX04
LinkDB
All DBs
Position
Unknown
AA seq
86 aa
AA seq
DB search
MATENLLPLELIDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLEEVTEIDPAEGNVKL
PKILLNGNNICMMVPGGDGQTVLEDE
NT seq
261 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagagaaccttctccccctcgaactcatcgacaaatgtgttggatcgcaaata
tgggtcattatgaacggcggaaaggaattcaccggcaaacttgtaggatttgatgactac
gtcaacatggttctcgaagaggtgaccgagatcgaccctgcggagggtaacgtgaagttg
ccgaaaatcctcctcaacggcaacaacatctgcatgatggtaccaggcggagacggacag
acggttctggaggacgagtaa
DBGET
integrated database retrieval system