KEGG   Parastagonospora nodorum: SNOG_04169
Entry
SNOG_04169        CDS       T01161                                 
Name
(RefSeq) hypothetical protein
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
pno  Parastagonospora nodorum
Pathway
pno03020  RNA polymerase
pno03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SNOG_04169
  09124 Replication and repair
   03420 Nucleotide excision repair
    SNOG_04169
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pno03021]
    SNOG_04169
   03400 DNA repair and recombination proteins [BR:pno03400]
    SNOG_04169
Transcription machinery [BR:pno03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     SNOG_04169
DNA repair and recombination proteins [BR:pno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      SNOG_04169
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 5971461
NCBI-ProteinID: XP_001794593
UniProt: Q0UVP5
LinkDB
Position
Unknown
AA seq 177 aa
MEDDPQPQRPVQQVQVFRAPRLVSRPKPRMEQEEEMGNEIKLGDFEDVHALSVSEARAVV
TAVHEARRKKDPENNPLRDRIHNDQPVIMHFLEYLDNFSRYKQEESLHSIAALFDTHPEL
TTVEKALLGTLTPDTADEATTLIPSLASKMDSDTLQPILDELTKMRMLDKIARGHHK
NT seq 534 nt   +upstreamnt  +downstreamnt
atggaagacgacccccagccacagcgccccgtccagcaggtgcaggtcttccgcgccccg
cgcctcgtctcgcgcccgaagccgcgcatggagcaggaggaagagatgggcaacgagatc
aagctgggcgactttgaggacgtacacgccctgtccgtctcggaagcgcgcgccgtcgtt
actgcagtccacgaggcgcggcggaaaaaggaccccgagaacaaccccctgcgcgaccgc
atccacaacgaccagcccgtcatcatgcacttcctcgagtacctcgacaacttctcgcgc
tacaagcaggaggagagcctgcattccatcgccgcgcttttcgacacccaccctgagctg
acgaccgtcgagaaggccctgctaggaaccctcacaccagacaccgccgatgaggctacg
acgcttatcccgtcactggcgagcaaaatggacagcgacacactgcagcctatattggac
gagctgactaagatgcgtatgttggacaagatcgcccgtggtcaccacaagtga

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