Parastagonospora nodorum: SNOG_05249
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Entry
SNOG_05249 CDS
T01161
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pno
Parastagonospora nodorum
Pathway
pno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SNOG_05249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pno03019
]
SNOG_05249
03041 Spliceosome [BR:
pno03041
]
SNOG_05249
03009 Ribosome biogenesis [BR:
pno03009
]
SNOG_05249
03016 Transfer RNA biogenesis [BR:
pno03016
]
SNOG_05249
Enzymes [BR:
pno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SNOG_05249
Messenger RNA biogenesis [BR:
pno03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
SNOG_05249
Spliceosome [BR:
pno03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
SNOG_05249
Complex C
U4/U6.U5 tri-SnRNP related factors
SNOG_05249
Ribosome biogenesis [BR:
pno03009
]
Eukaryotic type
Pre-60S particles
Helicases
SNOG_05249
Transfer RNA biogenesis [BR:
pno03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
SNOG_05249
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
5972532
NCBI-ProteinID:
XP_001795657
UniProt:
A0A7U2FC21
Q0USL5
LinkDB
All DBs
Position
Unknown
AA seq
1060 aa
AA seq
DB search
MDELFDVFEDGAQQNAAPKKSKKRQANGDVKSPVEDAHMSDAPAEVPEAAQEDSTENESA
QILKRQRRDEEPEPIVTDDFETEQSREVAAAAGLQATQDGQAVVLSHQVRHQVALPPDYD
YVPISEHKPPQEPARTWPFTLDPFQQVSIASIQRNESVLVSAHTSAGKTVVAEYAIAQCL
KNNQRVIYTSPIKALSNQKYREFMAEFGDVGLMTGDVTINPTATCLVMTTEILRSMLYRG
SEIMREVAWVVFDEVHYLRDKSRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKT
HGQPCHVVYTDFRPTPLQHYFFPQGADGIHLVVDEKGVFREENFQKAMASIADKAGTTAD
DKLAKMKGKGKNKKTNTGGNKEQSDIYKIVKMIMVKSYNPVIVFSFSKRECENYALSMSS
LAFNDDSEKAMVTKVFNSAIEMLSEEDRALPQIQHILPLLRRGIGVHHSGLLPILKETIE
ILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVAQRWVTPGEFIQMSGRAGRRG
LDDRGIVIMMIDHSMEPAVANEIVRGQQDNLNSAFHLGYNMILNLMRVEGISPEFMLERC
FFQFQNTAGVSTLEKQLQALENERLNTIITDEATVKDYYNLRQQLDTHTKDIRDVIMHPN
YCLQFLQSGRMVKVKYQDHDFGWGAVVGFQARRANKGEVIPPQESYLVDVLLSVDANTKY
IPQSSNGVLPPGVRPPPPGEKGKMEVVSVVLNCIESIGHLRVFLPSELKTTDQKNSVRKA
LDEVKKRFPDGIAVLDPIENMKIGDDSFKRLLRKIEVLESRLLSNPLHNSPRLPELYSQY
ANKMTIGDKIKKTKKEIADALSVIQLDELKSRKRVLRRLGFIDDADVVQLKARVACEIST
GDELVLSELLFNRFFNELTPEQCAACLSCFIFEEKSKEVPALKEELAKPYREIQQQARVI
AKISVESKLTVNEEEYLKSFKFELMDVVYAWSKGATFAEICKMTDVYEGSLIRLFRRLEE
LLRQIAQASKVMGSEELEQKFTAALDLVRRDLVAAQSLYL
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atggacgagcttttcgacgtattcgaggacggcgcgcagcaaaatgcggcgcccaaaaag
agcaagaagcgccaggcaaacggtgacgtgaaatcgcctgtggaagacgcacatatgtcc
gacgcacccgccgaggtgcctgaagccgcacaggaggacagcaccgagaacgagtccgca
caaatcctcaagaggcaaaggcgcgacgaggaacccgagccaattgtgacggacgacttc
gagacggaacagtcgcgtgaggtcgctgccgctgcggggcttcaggcgactcaagacgga
caggctgtcgtgctctcgcatcaagtccgccatcaggtcgccctaccacccgactacgac
tacgtacccatctctgagcacaagccgccacaggagcctgcacgcacatggcccttcact
ctcgatcctttccagcaggtctcgattgcatccatccaacggaacgagagtgtcttggtg
tctgcgcatacgtcggctggtaaaacagtcgtggcagaatacgccattgcgcagtgcttg
aagaacaaccagagagtcatctataccagtcccatcaaggcgctcagcaaccaaaagtac
cgcgaatttatggccgaattcggcgatgttggtctcatgacgggtgacgttaccatcaac
cctacggcaacatgcttggtcatgactactgagattttacgatccatgttgtaccgaggc
tcggagatcatgcgcgaagtcgcctgggtcgtgttcgacgaggtgcactacctacgagac
aagtcaagaggtgtcgtttgggaagagactatcatcctgctgccggacaaggtccgctac
gttttcctttcagccacgatccccaacgctatgcaattcgccgagtggatcaccaagacg
catggccagccatgtcacgttgtttacacagacttccgaccgacacctctacaacattat
ttcttcccacaaggcgccgacggtattcacctggtcgtcgacgaaaagggcgtgttccgg
gaggagaacttccagaaggccatggcttcgattgccgacaaggctggcaccactgccgac
gataagttggccaagatgaaaggcaaaggcaagaacaagaagaccaataccggcggaaat
aaggagcagtcagacatctacaagatcgtcaagatgatcatggtgaagagctacaaccca
gtcattgtgttcagtttcagcaaacgggagtgtgagaactacgccctttcgatgagctcc
cttgccttcaacgacgattcggaaaaggccatggttacaaaggtcttcaacagcgcaatc
gagatgttgtccgaggaggatcgcgccctcccccagattcagcacattcttcccttgcta
cgtagaggcattggtgtccatcactccggactgctgcctattctgaaagagacgatcgag
attttgttccaagaagggttgatcaaagtcctgtttgccacagagacgttctccattggc
ttgaacatgccggccaagactgtcgtcttcaccagcgtgcgtaagtttgatggtgtcgcg
caacgatgggtgactcccggcgaattcattcaaatgtctggtcgagctggtcgccgtggc
ctcgacgatcgtggtattgtcatcatgatgatcgatcattccatggagcctgccgtggcg
aacgagattgttcgaggacagcaggacaacctaaactctgcattccatcttggctacaac
atgattttgaacctgatgcgtgtcgagggtatctcgcctgagtttatgcttgagaggtgc
ttcttccagttccaaaatactgctggcgtctcaaccctagaaaagcaactgcaagctctc
gaaaacgagagactgaacaccatcatcactgacgaagctaccgtcaaggactactacaac
ctaagacagcagctagacacacacaccaaagacatccgcgatgtcatcatgcatccaaac
tactgtctgcagtttttgcaatcgggtcgaatggtcaaagtcaaataccaagaccacgac
tttggctggggtgccgtggtaggattccaagctcggagagcaaacaagggcgaggtcata
ccaccacaggagtcgtaccttgtcgacgtgttgctctcagtagatgccaacacaaagtac
atacctcaatcgtcgaacggtgtgctgccgccaggcgttcgtccacctccacctggtgag
aagggcaagatggaagtggtgtctgtagtcttgaactgcatagagtccattggccacctc
cgcgttttcttgccaagcgaactcaagacgacagaccagaagaacagtgtgcgcaaagct
ttggatgaggtcaaaaagcgtttccctgacggcattgctgtccttgaccctatcgaaaac
atgaaaatcggagacgacagcttcaagcgcctacttcggaaaatcgaagtgcttgaatct
cgcctgctctccaatcctctgcacaactcccccagacttccagaactgtacagccagtac
gcgaacaagatgacaattggtgacaagataaagaagaccaagaaggagattgcggacgcc
ctctcagttatccagttggatgagctgaagagcagaaagcgtgttcttcgtcggctggga
ttcatcgacgatgctgatgttgtccagctgaaggcgcgagtggcttgcgagatcagcacc
ggcgacgagcttgtactcagcgagcttctctttaaccgctttttcaacgagctcacgcca
gaacagtgtgctgcatgcttgagttgcttcatcttcgaagagaagagcaaggaggtccca
gcgctcaaagaagagctggccaagccatatcgagagattcaacaacaagctagggtcatc
gcaaagatatcagtggagagcaagcttactgtgaacgaagaggaatatctcaagtcgttc
aagttcgagcttatggacgtcgtatacgcatggtcgaagggcgcgacctttgctgagatc
tgtaaaatgaccgacgtgtatgaaggcagtctgatcaggctcttccgacgactggaggag
ctattacgccagatcgcccaggcctccaaagtcatgggtagtgaggagctcgagcaaaag
ttcaccgccgctctagacctcgtgaggagagatctggtcgcagcccagtctttgtacctc
tga
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integrated database retrieval system
