Parastagonospora nodorum: SNOG_06940
Help
Entry
SNOG_06940 CDS
T01161
Symbol
SNOG_06939
Name
(RefSeq) hypothetical protein
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pno
Parastagonospora nodorum
Pathway
pno03030
DNA replication
pno03410
Base excision repair
pno03420
Nucleotide excision repair
pno03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SNOG_06940 (SNOG_06939)
03410 Base excision repair
SNOG_06940 (SNOG_06939)
03420 Nucleotide excision repair
SNOG_06940 (SNOG_06939)
03430 Mismatch repair
SNOG_06940 (SNOG_06939)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pno03032
]
SNOG_06940 (SNOG_06939)
03400 DNA repair and recombination proteins [BR:
pno03400
]
SNOG_06940 (SNOG_06939)
Enzymes [BR:
pno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SNOG_06940 (SNOG_06939)
6.5.1.6 DNA ligase (ATP or NAD+)
SNOG_06940 (SNOG_06939)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
SNOG_06940 (SNOG_06939)
DNA replication proteins [BR:
pno03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
SNOG_06940 (SNOG_06939)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
SNOG_06940 (SNOG_06939)
DNA repair and recombination proteins [BR:
pno03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
SNOG_06940 (SNOG_06939)
NER (nucleotide excision repair)
Other NER factors
SNOG_06940 (SNOG_06939)
MMR (mismatch excision repair)
Other MMR factors
SNOG_06940 (SNOG_06939)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
5974190
NCBI-ProteinID:
XP_001797300
UniProt:
Q0UMS4
LinkDB
All DBs
Position
Unknown
AA seq
856 aa
AA seq
DB search
MAPKQATLGKFFGNPNANTSKQQSKLSFSTKPKAQKIDAEIKDELESSTGDVKAEPASTA
EEIEVKQETSGEAMELDSSSSETGKKRPAKEEEEEDSEDEPPMKRQRRKPSKDSEPSKKP
KPAAKKSEKASVKSNKQPTKVKAAVLEDDDDEVATTALASKGKKITGKSPTPALPDYDGS
AKEEEEETLSSDEEPEEMKKKAREKVQTALKSNTKDPYPDWKAGDPVPYAALCTTFSKIE
MTTKRLEILAHCSLFLRQVLRLTPSDLLPTTLLMINKLAADYTGVELGIGESLIKKAISE
STGRTLQHINSDHNEIGDLGLVAAKSRSKQPTMFKPKPLTIQGVHKGLLAIATIEGQGAQ
GRKVDGIKKLLSAADSHNAGKHIDIEENKGGPSESKFIVRTLEGKLRLGLAERTVVVALA
QAMIFHEMSQNGKTPSTTDLGTAESILKTVYSELPSYEVIIPAMLEHGILQLRENCRLQP
GVPLKPMLAKPTKSITEVLDRFEGKDFTCEYKYDGERAQIHFVAHDADMEMATTAPSAGK
SDRGVSNIFSRNSEDLSKKYPDILAKLPTWIKEGTKSFVLDCETVAWDMVEKKVLPFQQL
MTRKKEGFKVCVFAFDILYLNGEALVNKSFRERREHLQDAFIPILLEDSVKASCEGLMVK
MLDGPESSYEPSKRSQNWLKVKKDYLAGVGDSLDLVVLGAYFGKGKRTSWYGAFLLACYN
PNTQNYESVCNIGTGFSEAILETLHEQLSEIVIDKPKPFYTHSVGNKDQPDVWFEPRYVW
EVKTADLTLSPRYRAAADEVSGGGKGISLRFPRFIKERDDKKPDQASTSKMIAEMYQRQE
SVSKTKGPSADDDFEY
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgaaacaggctactttgggaaagttctttggaaacccgaacgcaaacacatcg
aaacagcagtcgaagctgtctttttcgaccaaaccgaaggcccaaaagatagatgcagaa
atcaaagatgagctggagtcatctaccggagatgtcaaagccgagcccgcatccacggca
gaggagatagaagtcaagcaggagacaagcggcgaagcgatggaattagacagctcctcc
tcagagactggaaagaagaggcctgcgaaggaagaagaagaagaagactcagaagatgag
ccccccatgaagcgtcagcggagaaagccctcaaaagactccgaaccttcgaagaagccg
aagccagcagcaaagaaatctgagaaggcgtctgtaaagtcgaacaaacaacctacgaaa
gtcaaagcagcggtgctggaagacgacgacgacgaagttgctacaacagccttggccagc
aaaggcaagaagatcactggaaagtcacctacgcctgcactaccagactacgacggcagt
gcgaaggaagaagaagaagagacacttagctcagacgaggagccagaggagatgaagaaa
aaagcgcgggaaaaggtgcagactgccctcaagtccaatacaaaggacccatatcctgac
tggaaggctggggaccctgtaccgtacgccgcgctgtgcactaccttttcgaagatcgaa
atgaccacgaaacgactggagatattggcacattgctcgctgtttctacgacaggtgttg
cgtttgacaccatccgacctgctacccactactctactcatgatcaacaagctcgcggcc
gactacacgggagtcgagcttggcattggggagtcactcatcaagaaagccatttcggag
agtacaggtcgaaccctgcagcacatcaacagcgatcataacgagatcggtgaccttgga
cttgtggcggccaagagtcgatcgaagcagccaacgatgttcaagcccaagcctctcact
attcaaggcgtgcacaaaggcctgttggcgattgcgaccatcgaggggcagggtgcgcaa
ggacgaaaagttgatggcatcaagaagctactttccgctgctgattctcacaatgctggt
aagcatatcgatatagaagaaaacaagggtggtcctagcgaatcgaaattcatcgtgcgc
acacttgagggtaagctcaggttgggccttgccgagaggaccgttgttgttgcgctcgct
caggccatgatatttcacgaaatgtcgcaaaacggcaagacaccctcaacgactgacctg
ggaacggccgagtcgatactcaagactgtgtacagtgagctcccaagttacgaagtcatc
attccagcaatgttggagcatggcattctgcagctgcgtgaaaactgtcgactgcaaccc
ggtgtaccactcaaacctatgcttgccaagccaacgaaatccatcacagaggttcttgac
cgctttgaaggcaaagattttacatgcgagtacaagtacgacggagagcgagcccaaatc
catttcgtcgcgcacgacgccgatatggaaatggcgacgacagctccgtccgccggaaag
agcgaccgcggagtatccaacattttctctaggaactcggaggatttgtccaagaaatac
ccagatattctcgcaaaactacccacttggatcaaagaaggcacaaagagctttgttttg
gactgcgaaacagtggcctgggacatggtcgaaaagaaagtcctgccattccaacagctc
atgacccgtaagaaggaaggattcaaggtctgcgtctttgcctttgacatactctacctc
aacggtgaagcattggtcaacaagtctttccgtgagcgccgcgaacacctccaagatgca
ttcattcctatattgcttgaagactcagtgaaagcgtcctgcgagggtctaatggtgaag
atgcttgacggcccggaatcctcatatgagccatccaagcgatctcaaaactggctgaag
gtcaagaaagactaccttgctggcgttggcgactcactcgatcttgtggttttgggagcg
tacttcggcaaaggcaagagaaccagctggtacggagctttcttgctcgcgtgctacaat
cctaacacacagaactacgagtcggtctgcaacatcggtactggcttttccgaagctatt
ctcgagaccctacatgagcagttgtcggaaatcgtcattgacaagccaaagccgttctac
acgcactccgtgggcaacaaggaccagcctgatgtatggtttgagccgcgctacgtgtgg
gaagtcaagactgcagacctcactctatcaccaagatatcgggctgcagctgacgaggtc
tctggtggcggcaagggtatcagtttacgttttccccgtttcatcaaggaaagggacgat
aaaaagccagatcaggcgtccacatcgaagatgatcgcggagatgtatcaacggcaggag
agcgtatccaagaccaaaggcccaagtgcggatgatgatttcgagtactag
DBGET
integrated database retrieval system
