Parastagonospora nodorum: SNOG_07247
Help
Entry
SNOG_07247 CDS
T01161
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pno
Parastagonospora nodorum
Pathway
pno03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pno00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SNOG_07247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pno03041
]
SNOG_07247
03009 Ribosome biogenesis [BR:
pno03009
]
SNOG_07247
Enzymes [BR:
pno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SNOG_07247
Spliceosome [BR:
pno03041
]
Complex A
U2 snRNP components
U2 related factors
SNOG_07247
Complex B
SNOG_07247
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
SNOG_07247
Ribosome biogenesis [BR:
pno03009
]
Eukaryotic type
90S particles
Helicases
SNOG_07247
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
AAA_19
SRP54
Flavi_DEAD
HA2_N
AAA_23
T2SSE
AAA_7
ResIII
ABC_tran
Motif
Other DBs
NCBI-GeneID:
5974483
NCBI-ProteinID:
XP_001797593
UniProt:
Q0ULW7
LinkDB
All DBs
Position
Unknown
AA seq
763 aa
AA seq
DB search
MHDMTIKREHNDDEGASSKRVKVEANGNGNSDNPYLAHWNDEKPVKSEYGGGDALASFKR
HATTCKQASQAEDGPNNPFTGRPLSSKYMSILKKRRDLPVHQQRDEFLRLYQESQILVFV
GETGSGKTTQIPQFVLFDDLPNQNAKMVACTQPRRVAAMSVAQRVAEEMDVELGEEVGYS
IRFEDKTGPNTILKYMTDGMLLREAMNDHNLTRYSTIILDEAHERTLATDILMGLLKEVV
LRRKDLKLIIMSATLDATKFQKYFHNAPLLAVPGRTHPVEVFYTPAPERDYVEAALRTVL
QIHATEPEGDILLFLTGEEEIEDACRKINLEAQDLSREGGAGPLVVYPLYGSLPPAQQQK
IFNPAPPPATHGGRPGRKCIVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLV
SPISKASAQQRAGRAGRTRPGKCFRLYTETAFKKELIEQTYPEILRSNLASTVLELKKLG
VDDLVHFDLMDPPAPETLMRALEELNYLACLDDEGELTTLGGLASGFPLDPALAVMLITS
PEFYCSNEILSLTALLSVPQVFVRPAASRKRADEMKELFAHPKGDHLTMLNVYHAFKGEE
AQANPKQWCHDHFLSYRALQQADNVRMQLKRIMEREELELMSTPFENKKYYENIQRALVA
GFFMQVAKRDGNGKAYTTVKDEQNVLLHPSTVLAEDSEWVIYNEFVLTTKNYIRTVTSVK
PEWLLDISPNYYDLSQFKKGDIKTALQRVTTKLQRKEAEKGRR
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacatgacgattaagcgcgaacacaacgacgacgagggcgccagttcgaagcgc
gtcaaggtcgaggccaacggaaatggcaattccgacaacccttacctggcgcattggaac
gacgagaagcccgtcaagagcgagtatggcggcggagatgcgctcgccagcttcaagcgc
cacgcaacgacgtgcaaacaggcgtcgcaggccgaagatggacccaacaaccccttcacc
ggccggccgctgtcgagcaagtacatgagcatcctgaagaagaggcgcgacctgccagtg
caccagcagagagatgagttcctcaggctgtaccaagagtcgcagatcctcgtcttcgtc
ggtgagacgggttccggaaagacgacgcagattccgcagtttgtcctcttcgacgacctc
cccaaccagaacgcaaagatggtcgcgtgtacccagccccgtcgtgtcgccgccatgtcc
gtcgcccagcgtgtcgccgaggaaatggacgtcgagcttggagaagaggtcggctacagc
atccgtttcgaggacaagacgggccccaacaccattctcaagtacatgaccgacggcatg
ttgctgcgcgaggccatgaacgaccacaacttgacccgctacagcaccatcatccttgac
gaggctcacgagcgcaccctggctaccgatatcctcatgggtcttcttaaagaggttgtg
ctgaggcgcaaggacctgaagctcatcatcatgagtgctaccctcgacgccaccaagttc
caaaagtacttccacaacgccccgctgctggccgtacccggacgaacccaccccgtcgaa
gtcttctacacacctgcgcccgagcgcgactatgtcgaggctgccctgcgcaccgtactg
cagattcacgccaccgagcccgaaggcgacatcttgctgttcctgactggagaggaggag
attgaggatgcgtgccggaagatcaatttggaagcgcaagatctgagcagagagggtggt
gccggtccgctcgtcgtatacccgttgtacgggtctctccctcccgcgcagcagcagaag
atcttcaaccctgcgccacccccagcaacacacggaggccggcctggaagaaagtgcatc
gtctccaccaacattgcggagacgtcgctgaccattgacggtatcgtctacgtcgtcgac
cctggttttagcaagcaaaaggtgtacaacccccgtatccgtgttgaatcgcttctcgtc
tctcccatctccaaggcttctgcccagcagcgtgctggtcgtgccggtcgtaccaggccc
ggaaagtgcttccgcctatacactgagaccgccttcaagaaggagctcatcgagcaaaca
tacccagaaattctgcggtcgaacttggccagcacggtcctcgagctgaagaagcttggt
gtcgacgacttggtacacttcgacctcatggaccctccagctcccgagacgctcatgcgt
gcgctggaagagctcaactacttggcctgtctggatgacgagggcgagctgaccacgctt
ggtggacttgcttctggcttccctcttgaccccgcgcttgccgtcatgctcatcacctcg
cccgagttctactgctcaaacgagatcttgtcgctcaccgcgctattgtcagtccctcag
gtctttgtgcgacctgctgccagccgtaagcgagccgacgagatgaaggagctctttgcg
catcccaaaggtgaccacctcacgatgttgaacgtgtaccatgcatttaagggcgaggag
gcgcaagccaaccccaagcagtggtgccacgatcacttcctatcctaccgtgctctgcaa
caagccgacaatgtacgcatgcagttgaagcgcataatggagcgcgaggagctcgagctc
atgtccacgccgtttgagaacaagaagtactatgagaatattcagcgtgctcttgtagct
ggcttcttcatgcaggtcgccaagcgcgacggcaacggcaaagcatacacgacggtcaag
gacgagcagaatgtattactgcatccgagcacggtgcttgccgaggacagcgagtgggtc
atctacaatgagtttgtcctgaccacgaagaattatatcaggacagtcacgtcggtaaag
cccgagtggttgttggacatttcgcccaactactatgatctctcccagttcaagaagggc
gacatcaagacggcgctgcagagagtcacaacaaagctgcagcgtaaggaggcagaaaag
ggacgcaggtag
DBGET
integrated database retrieval system
